Functional clusters

Information

  • Type MapMan
  • Description External stimuli response.toxic compounds.heavy metal.metallothionein

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_344 1 CH_aag_110 2 2 0.0000802568
Acer truncatum chr3 1 CH_acertr_152 3 3 0.00000041748
Acer truncatum chr2 1 CH_acertr_220 4 50 0.0000168311
Camellia sinensis var. sinensis Chr10 1 CH_camsi_407 3 5 0.00000378378
Cannabis sativa NC_044375.1 1 CH_cansat_343 2 2 0.000393985
Cicer arietinum L. Ca_LG1_v3 1 CH_car_277 2 2 0.000466981
Citrus clementina scaffold_8 1 CH_ccl_407 2 2 0.000246093
Carpinus fangiana Cfa04 1 CH_cfa_55 4 4 0.000000000091233
Durio zibethinus NW_019167871.1 1 CH_dzi_408 2 2 0.000973326
Fragaria x ananassa Fvb3-2 1 CH_fan_176 3 3 0.000000585482
Fragaria x ananassa Fvb3-1 1 CH_fan_177 3 3 0.000000585482
Fragaria vesca Fvb3 1 CH_fve_141 3 3 0.000000104115
Gossypium hirsutum D05 1 CH_ghi_266 4 11 0.00000019996
Gossypium hirsutum D13 1 CH_ghi_351 3 3 0.00000216462
Gossypium hirsutum A04 1 CH_ghi_403 3 4 0.00000865652
Gossypium raimondii Chr09 1 CH_gra_64 5 9 0.0000000000100399
Helianthus annuus HanXRQChr01 1 CH_han_273 3 3 0.000000492789
Hydrangea macrophylla Hma1.2p1_0418F.1 1 CH_hma_398 2 2 0.000666519
Hydrangea macrophylla Hma1.2p1_0035F.1 1 CH_hma_399 2 2 0.000666519
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_505 2 2 0.000514007
Magnolia biondii Chr14 1 CH_mbi_645 2 2 0.000728491
Malus domestica Chr11 1 CH_mdo_117 4 4 0.000000000297757
Malus domestica Chr03 1 CH_mdo_408 3 8 0.0000675766
Manihot esculenta Chromosome08 1 CH_mes_105 4 4 0.000000000338145
Nelumbo nucifera chr1 1 CH_nnu_444 2 5 0.000654022
Oryza sativa ssp. japonica chr12 1 CH_osa_32 6 25 0.00000000000489815
Prunus persica Pp06 1 CH_ppe_514 2 2 0.000745962
Papaver somniferum NC_039366.1 1 CH_pso_226 3 3 0.0000000639203
Quercus lobata 11 1 CH_qlo_247 4 4 0.000000000136253
Quercus lobata 3 1 CH_qlo_481 3 3 0.000000659739
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_315 3 5 0.000000476719
Sequoiadendron giganteum chr5 1 CH_sgi_24 9 10 4.49904e-31
Solanum tuberosum ST4.03ch09 1 CH_stu_526 2 2 0.000307472
Trochodendron aralioides group6 1 CH_tar_529 2 2 0.000600366
Trifolium pratense Tp57577_TGAC_v2_LG4 1 CH_tpr_326 2 2 0.000227092
Tripterygium wilfordii NC_052233.1 1 CH_twi_114 3 4 0.00000156631
Vitis vinifera chr6 1 CH_vvi_186 3 4 0.00000069421
Anthoceros agrestis Sc2ySwM_344 2 CH_aag_110 2 2 0.0000802568
Acer truncatum chr3 2 CH_acertr_152 3 3 0.00000041748
Acer truncatum chr2 2 CH_acertr_220 4 50 0.0000168311
Camellia sinensis var. sinensis Chr10 2 CH_camsi_407 3 5 0.00000378378
Cannabis sativa NC_044375.1 2 CH_cansat_343 2 2 0.000393985
Cicer arietinum L. Ca_LG1_v3 2 CH_car_277 2 2 0.000466981
Citrus clementina scaffold_8 2 CH_ccl_407 2 2 0.000246093
Carpinus fangiana Cfa04 2 CH_cfa_55 4 4 0.000000000091233
Durio zibethinus NW_019167871.1 2 CH_dzi_408 2 2 0.000973326
Fragaria x ananassa Fvb3-2 2 CH_fan_176 3 3 0.000000585482
Fragaria x ananassa Fvb3-1 2 CH_fan_177 3 3 0.000000585482
Fragaria vesca Fvb3 2 CH_fve_141 3 3 0.000000104115
Gossypium hirsutum D05 2 CH_ghi_266 4 11 0.00000019996
Gossypium hirsutum D13 2 CH_ghi_351 3 3 0.00000216462
Gossypium hirsutum A04 2 CH_ghi_403 3 4 0.00000865652
Gossypium raimondii Chr09 2 CH_gra_64 5 9 0.0000000000100399
Helianthus annuus HanXRQChr01 2 CH_han_273 3 3 0.000000492789
Hydrangea macrophylla Hma1.2p1_0418F.1 2 CH_hma_398 2 2 0.000666519
Hydrangea macrophylla Hma1.2p1_0035F.1 2 CH_hma_399 2 2 0.000666519
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_505 2 2 0.000514007
Magnolia biondii Chr14 2 CH_mbi_645 2 2 0.000728491
Malus domestica Chr11 2 CH_mdo_117 4 4 0.000000000297757
Malus domestica Chr03 2 CH_mdo_408 3 8 0.0000675766
Manihot esculenta Chromosome08 2 CH_mes_105 4 4 0.000000000338145
Nelumbo nucifera chr1 2 CH_nnu_444 2 5 0.000654022
Oryza sativa ssp. japonica chr12 2 CH_osa_32 6 25 0.00000000000489815
Prunus persica Pp06 2 CH_ppe_514 2 2 0.000745962
Papaver somniferum NC_039366.1 2 CH_pso_226 3 3 0.0000000639203
Quercus lobata 11 2 CH_qlo_247 4 4 0.000000000136253
Quercus lobata 3 2 CH_qlo_481 3 3 0.000000659739
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_315 3 5 0.000000476719
Sequoiadendron giganteum chr5 2 CH_sgi_24 9 10 4.49904e-31
Solanum tuberosum ST4.03ch09 2 CH_stu_526 2 2 0.000307472
Trochodendron aralioides group6 2 CH_tar_529 2 2 0.000600366
Trifolium pratense Tp57577_TGAC_v2_LG4 2 CH_tpr_326 2 2 0.000227092
Tripterygium wilfordii NC_052233.1 2 CH_twi_114 3 4 0.00000156631
Vitis vinifera chr6 2 CH_vvi_186 3 4 0.00000069421

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001