Functional clusters
Information
- Type MapMan
- Description External stimuli response.pathogen.effector-triggered immunity (ETI) network.TNL-mediated effector-triggered immunity
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Cucumis sativus L. | chr2 | 1 | CH_csa_26 | 9 | 43 | 0.00000000000000518617 |
Gossypium hirsutum | A11 | 1 | CH_ghi_30 | 12 | 57 | 5.53447e-19 |
Helianthus annuus | HanXRQChr04 | 1 | CH_han_249 | 7 | 48 | 0.000000232895 |
Lotus japonicus | Contig00272 | 1 | CH_lja_6 | 16 | 23 | 2.30262e-28 |
Nelumbo nucifera | chr5 | 1 | CH_nnu_84 | 4 | 5 | 0.0000000340602 |
Quercus lobata | 9 | 1 | CH_qlo_132 | 17 | 71 | 0.000000000000013624 |
Sechium edule | LG11 | 1 | CH_sed_157 | 4 | 24 | 0.0000156916 |
Cucumis sativus L. | chr2 | 2 | CH_csa_26 | 9 | 43 | 0.00000000000000518617 |
Gossypium hirsutum | A11 | 2 | CH_ghi_30 | 12 | 57 | 5.53447e-19 |
Helianthus annuus | HanXRQChr04 | 2 | CH_han_249 | 7 | 48 | 0.000000232895 |
Lotus japonicus | Contig00272 | 2 | CH_lja_6 | 16 | 23 | 2.30262e-28 |
Nelumbo nucifera | chr5 | 2 | CH_nnu_84 | 4 | 5 | 0.0000000340602 |
Quercus lobata | 9 | 2 | CH_qlo_132 | 17 | 71 | 0.000000000000013624 |
Sechium edule | LG11 | 2 | CH_sed_157 | 4 | 24 | 0.0000156916 |
Available child term results
Ontology identifier | Description | Number of clusters |
---|---|---|
26.9.2.1.1 | External stimuli response.pathogen.effector-triggered immunity (ETI) network.TNL-mediated effector-triggered immunity.effector receptor (NLR) | 540 |
26.9.2.1.2 | External stimuli response.pathogen.effector-triggered immunity (ETI) network.TNL-mediated effector-triggered immunity.regulatory protein (ADR) | 28 |
26.9.2.1.3 | External stimuli response.pathogen.effector-triggered immunity (ETI) network.TNL-mediated effector-triggered immunity.regulatory protein (NRG) | 101 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |