Functional clusters

Information

  • Type MapMan
  • Description External stimuli response.salinity.SOS (Salt Overly Sensitive) signalling pathway.SOS3-SOS2 signalling.calcium-dependent regulatory protein (SCaBP8/CBL10)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Beta vulgaris Chr2_EL10_PGA_scaffold6 1 CH_bvu_178 2 2 0.0000827917
Camellia sinensis var. sinensis Chr12 1 CH_camsi_139 4 13 0.000000000206785
Malus domestica Chr09 1 CH_mdo_559 2 2 0.000227527
Quercus lobata CM012294 1 CH_qlo_888 2 2 0.000309773
Schrenkiella parvula ch6-2 1 CH_spa_220 2 2 0.000236202
Trochodendron aralioides group9 1 CH_tar_77 3 3 0.00000000540676
Vitis vinifera chr4 1 CH_vvi_269 2 2 0.000076063
Beta vulgaris Chr2_EL10_PGA_scaffold6 2 CH_bvu_178 2 2 0.0000827917
Camellia sinensis var. sinensis Chr12 2 CH_camsi_139 4 13 0.000000000206785
Malus domestica Chr09 2 CH_mdo_559 2 2 0.000227527
Quercus lobata CM012294 2 CH_qlo_888 2 2 0.000309773
Schrenkiella parvula ch6-2 2 CH_spa_220 2 2 0.000236202
Trochodendron aralioides group9 2 CH_tar_77 3 3 0.00000000540676
Vitis vinifera chr4 2 CH_vvi_269 2 2 0.000076063

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001