Functional clusters

Information

  • Type MapMan
  • Description External stimuli response.pathogen.defense mechanisms

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr5 1 CH_ath_247 4 13 0.0000608531
Malus domestica Chr14 1 CH_mdo_120 6 13 0.000000000360376
Schrenkiella parvula ch6-6 1 CH_spa_150 4 10 0.0000251213
Arabidopsis thaliana Chr5 2 CH_ath_247 4 13 0.0000608531
Malus domestica Chr14 2 CH_mdo_120 6 13 0.000000000360376
Schrenkiella parvula ch6-6 2 CH_spa_150 4 10 0.0000251213

Available child term results

Ontology identifier Description Number of clusters
26.9.3.1 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR) 2
26.9.3.1.1 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).regulatory protein (NPR1) 12
26.9.3.1.2 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).NPR1-interactive transcription factor (TGA) 2
26.9.3.1.4 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).regulatory protein (CBP60/SARD) 82
26.9.3.1.5.1 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).pipecolic acid metabolism.aminotransferase (ALD1) 2
26.9.3.1.5.2 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).pipecolic acid metabolism.cyclodeaminase (SARD4) 10
26.9.3.1.5.3 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).pipecolic acid metabolism.pipecolate N-hydroxylase (FMO1) 8
26.9.3.1.5.4 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).pipecolic acid metabolism.pipecolate oxidase (SOX) 25
26.9.3.2 External stimuli response.pathogen.defense mechanisms.defensin activities 2
26.9.3.2.1 External stimuli response.pathogen.defense mechanisms.defensin activities.defensin (PDF1) 59
26.9.3.2.2 External stimuli response.pathogen.defense mechanisms.defensin activities.defensin (PDF2) 108
26.9.3.2.3 External stimuli response.pathogen.defense mechanisms.defensin activities.defensin (PDF3) 87
26.9.3.3.1 External stimuli response.pathogen.defense mechanisms.WRKY33-dependent plant immunity.transcription factor (WRKY33) 2
26.9.3.3.2 External stimuli response.pathogen.defense mechanisms.WRKY33-dependent plant immunity.WRKY33-activating protein (SIB) 18
26.9.3.4 External stimuli response.pathogen.defense mechanisms.pathogen polygalacturonase inhibitor (PGIP) 143

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001