Functional clusters

Information

  • Type MapMan
  • Description External stimuli response.salinity.SOS (Salt Overly Sensitive) signalling pathway.sodium:proton antiporter (SOS1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC05 1 CH_bca_1064 2 3 0.000641272
Carya illinoinensis Chr05 1 CH_cil_174 3 3 0.00000000576299
Daucus carota DCARv2_Chr9 1 CH_dca_78 3 3 0.00000000610156
Malus domestica Chr16 1 CH_mdo_497 2 2 0.000113763
Petunia axillaris Peaxi162Scf00130 1 CH_pax_265 2 2 0.000211067
Simmondsia chinensis GWHAASQ00000003 1 CH_sci_174 2 2 0.0000851426
Sequoiadendron giganteum chr9 1 CH_sgi_927 2 2 0.0000487151
Solanum lycopersicum SL4.0ch04 1 CH_sly_425 2 2 0.000176082
Schrenkiella parvula ch1-1 1 CH_spa_77 3 3 0.0000000371957
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_264 2 2 0.0000929238
Brassica carinata ChrC05 2 CH_bca_1064 2 3 0.000641272
Carya illinoinensis Chr05 2 CH_cil_174 3 3 0.00000000576299
Daucus carota DCARv2_Chr9 2 CH_dca_78 3 3 0.00000000610156
Malus domestica Chr16 2 CH_mdo_497 2 2 0.000113763
Petunia axillaris Peaxi162Scf00130 2 CH_pax_265 2 2 0.000211067
Simmondsia chinensis GWHAASQ00000003 2 CH_sci_174 2 2 0.0000851426
Sequoiadendron giganteum chr9 2 CH_sgi_927 2 2 0.0000487151
Solanum lycopersicum SL4.0ch04 2 CH_sly_425 2 2 0.000176082
Schrenkiella parvula ch1-1 2 CH_spa_77 3 3 0.0000000371957
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_264 2 2 0.0000929238

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001