Functional clusters

Information

  • Type MapMan
  • Description External stimuli response.light.UV-A/blue light.cryptochrome-mediated photoperception.cryptochrome-signalling inhibitor (BIC)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Lonicera japonica GWHAAZE00000002 1 CH_lonja_466 2 2 0.000179662
Physcomitrium patens Chr03 1 CH_ppa_164 2 2 0.000183818
Populus trichocarpa Chr04 1 CH_ptr_437 2 2 0.000346801
Populus trichocarpa Chr09 1 CH_ptr_438 2 2 0.000346801
Solanum lycopersicum SL4.0ch11 1 CH_sly_414 2 2 0.000176082
Solanum pennellii Spenn-ch11 1 CH_spe_361 2 2 0.000133437
Solanum tuberosum ST4.03ch11 1 CH_stu_465 2 2 0.000153736
Lonicera japonica GWHAAZE00000002 2 CH_lonja_466 2 2 0.000179662
Physcomitrium patens Chr03 2 CH_ppa_164 2 2 0.000183818
Populus trichocarpa Chr04 2 CH_ptr_437 2 2 0.000346801
Populus trichocarpa Chr09 2 CH_ptr_438 2 2 0.000346801
Solanum lycopersicum SL4.0ch11 2 CH_sly_414 2 2 0.000176082
Solanum pennellii Spenn-ch11 2 CH_spe_361 2 2 0.000133437
Solanum tuberosum ST4.03ch11 2 CH_stu_465 2 2 0.000153736

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001