Functional clusters

Information

  • Type MapMan
  • Description External stimuli response.symbiont.symbiosis signalling pathway.LysM receptor kinase (NFR1/LYK3)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Corylus avellana 3 1 CH_cav_368 2 2 0.000230008
Carpinus fangiana Cfa01 1 CH_cfa_314 2 2 0.000227204
Durio zibethinus NW_019168004.1 1 CH_dzi_387 2 3 0.000834235
Fragaria vesca Fvb5 1 CH_fve_436 2 3 0.000530165
Helianthus annuus HanXRQChr07 1 CH_han_516 2 2 0.000115929
Quercus lobata 6 1 CH_qlo_825 2 2 0.000154887
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_608 2 2 0.000119596
Rhododendron simsii chr02 1 CH_rsi_535 2 3 0.000580745
Simmondsia chinensis GWHAASQ00000003 1 CH_sci_173 2 2 0.0000851426
Corylus avellana 3 2 CH_cav_368 2 2 0.000230008
Carpinus fangiana Cfa01 2 CH_cfa_314 2 2 0.000227204
Durio zibethinus NW_019168004.1 2 CH_dzi_387 2 3 0.000834235
Eucalyptus grandis Chr06 2 CH_egr_845 2 2 0.000351165
Fragaria vesca Fvb5 2 CH_fve_436 2 3 0.000530165
Helianthus annuus HanXRQChr07 2 CH_han_516 2 2 0.000115929
Lotus japonicus Contig00564 2 CH_lja_329 2 2 0.000214523
Quercus lobata 6 2 CH_qlo_825 2 2 0.000154887
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_608 2 2 0.000119596
Rhododendron simsii chr02 2 CH_rsi_535 2 3 0.000580745
Simmondsia chinensis GWHAASQ00000003 2 CH_sci_173 2 2 0.0000851426

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001