Functional clusters

Information

  • Type MapMan
  • Description External stimuli response.pathogen.pattern-triggered immunity (PTI) network.fungal elicitor response.CERK1-LYK5 chitin receptor complex.component CERK1

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 1 CH_arhy_259 3 3 0.00000038452
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 1 CH_arhy_85 5 6 0.0000000000000465254
Beta vulgaris Chr5_EL10_PGA_scaffold2 1 CH_bvu_262 2 2 0.00049675
Capsicum annuum PGAv.1.6.scaffold134 1 CH_can_431 2 3 0.000743443
Coffea canephora chr5 1 CH_ccan_143 3 81 0.00000827704
Citrus clementina scaffold_2 1 CH_ccl_385 2 2 0.000246093
Carya illinoinensis Chr04 1 CH_cil_240 3 6 0.000000460964
Capsella rubella scaffold_3 1 CH_cru_250 2 2 0.0000731154
Eucalyptus grandis Chr01 1 CH_egr_204 4 4 0.000000000000601504
Glycine max Gm02 1 CH_gma_548 2 2 0.000569336
Medicago truncatula chr5 1 CH_mtr_36 8 30 1.6384e-20
Prunus persica Pp03 1 CH_ppe_318 2 2 0.0000745962
Phaseolus vulgaris Chr08 1 CH_pvu_393 2 2 0.000440836
Quercus lobata 5 1 CH_qlo_235 4 5 0.0000000000722492
Quercus lobata 8 1 CH_qlo_469 3 4 0.000000559721
Rhododendron simsii chr04 1 CH_rsi_109 5 37 0.000000000339567
Simmondsia chinensis GWHAASQ00000012 1 CH_sci_39 3 3 0.0000000108744
Solanum lycopersicum SL4.0ch02 1 CH_sly_458 2 2 0.000352164
Solanum pennellii Spenn-ch02 1 CH_spe_418 2 2 0.000266874
Trifolium pratense Tp57577_TGAC_v2_LG5 1 CH_tpr_202 3 23 0.0000608096
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_169 4 62 0.00000668248
Vigna mungo CM024073.1 1 CH_vmu_326 2 2 0.000387685
Vitis vinifera chr10 1 CH_vvi_404 2 3 0.000684523
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 2 CH_arhy_259 3 3 0.00000038452
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 2 CH_arhy_85 5 6 0.0000000000000465254
Beta vulgaris Chr5_EL10_PGA_scaffold2 2 CH_bvu_262 2 2 0.00049675
Capsicum annuum PGAv.1.6.scaffold134 2 CH_can_431 2 3 0.000743443
Coffea canephora chr5 2 CH_ccan_143 3 81 0.00000827704
Citrus clementina scaffold_2 2 CH_ccl_385 2 2 0.000246093
Carya illinoinensis Chr04 2 CH_cil_240 3 6 0.000000460964
Capsella rubella scaffold_3 2 CH_cru_250 2 2 0.0000731154
Eucalyptus grandis Chr01 2 CH_egr_204 4 4 0.000000000000601504
Glycine max Gm02 2 CH_gma_548 2 2 0.000569336
Prunus persica Pp03 2 CH_ppe_318 2 2 0.0000745962
Phaseolus vulgaris Chr08 2 CH_pvu_393 2 2 0.000440836
Quercus lobata 5 2 CH_qlo_235 4 5 0.0000000000722492
Quercus lobata 8 2 CH_qlo_469 3 4 0.000000559721
Rhododendron simsii chr04 2 CH_rsi_109 5 37 0.000000000339567
Simmondsia chinensis GWHAASQ00000012 2 CH_sci_39 3 3 0.0000000108744
Solanum lycopersicum SL4.0ch02 2 CH_sly_458 2 2 0.000352164
Solanum pennellii Spenn-ch02 2 CH_spe_418 2 2 0.000266874
Trifolium pratense Tp57577_TGAC_v2_LG5 2 CH_tpr_202 3 23 0.0000608096
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_169 4 62 0.00000668248
Vigna mungo CM024073.1 2 CH_vmu_326 2 2 0.000387685
Vitis vinifera chr10 2 CH_vvi_404 2 3 0.000684523

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001