Functional clusters

Information

  • Type MapMan
  • Description External stimuli response.pathogen.effector-triggered immunity (ETI) network.TNL-mediated effector-triggered immunity.regulatory protein (NRG)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_8 1 CH_aly_229 2 2 0.0000660044
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.11 1 CH_arhy_163 4 8 0.000000000709842
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 1 CH_arhy_169 4 9 0.00000000127762
Arabidopsis thaliana Chr5 1 CH_ath_71 3 3 0.00000000123118
Brassica oleracea C2 1 CH_bol_408 2 2 0.000686409
Brassica rapa A09 1 CH_bra_313 2 2 0.000429314
Camellia sinensis var. sinensis Chr1 1 CH_camsi_439 3 17 0.00000857422
Cannabis sativa NC_044373.1 1 CH_cansat_275 2 3 0.000196986
Capsicum annuum PGAv.1.6.scaffold836 1 CH_can_277 2 2 0.0000826105
Cicer arietinum L. Ca_LG7_v3 1 CH_car_294 2 3 0.000700425
Corylus avellana 11 1 CH_cav_257 2 2 0.0000766695
Carpinus fangiana Cfa01 1 CH_cfa_36 4 4 0.00000000000130333
Carya illinoinensis Chr01 1 CH_cil_10 12 20 1.39231e-34
Carica papaya supercontig_6 1 CH_cpa_276 2 3 0.000285185
Capsella rubella scaffold_8 1 CH_cru_265 2 2 0.0000731154
Durio zibethinus NW_019167960.1 1 CH_dzi_313 2 3 0.000417124
Erigeron canadensis Conyza_canadensis_scaffold:6 1 CH_eca_524 2 2 0.000942317
Eutrema salsugineum scaffold_6 1 CH_esa_72 3 3 0.0000000347941
Fragaria x ananassa Fvb1-3 1 CH_fan_104 4 9 0.0000000168192
Fragaria x ananassa Fvb1-1 1 CH_fan_195 3 4 0.00000118123
Fragaria x ananassa Fvb1-2 1 CH_fan_27 6 15 0.0000000000000432019
Fragaria x ananassa Fvb1-4 1 CH_fan_56 5 16 0.000000000203682
Fragaria x ananassa Fvb1-1 1 CH_fan_85 4 6 0.0000000036053
Fragaria vesca Fvb1 1 CH_fve_2 15 43 9.9752e-39
Glycine max Gm05 1 CH_gma_192 3 3 0.000000475419
Glycine max Gm17 1 CH_gma_31 6 10 3.43826e-16
Lotus japonicus chr4 1 CH_lja_26 5 5 0.00000000000000411894
Lonicera japonica GWHAAZE00000007 1 CH_lonja_29 8 27 1.7381e-20
Lactuca sativa Lsat_1_v8_lg_9 1 CH_lsa_86 6 73 0.0000000000382996
Malus domestica Chr02 1 CH_mdo_11 9 21 1.64297e-22
Malus domestica Chr15 1 CH_mdo_26 7 15 7.58197e-17
Medicago truncatula chr8 1 CH_mtr_21 10 38 1.11682e-24
Medicago truncatula chr5 1 CH_mtr_289 4 12 0.000000102952
Punica granatum NC_045129.1 1 CH_pgr_103 3 5 0.000000084452
Prunus persica Pp07 1 CH_ppe_9 10 14 5.08041e-31
Pisum sativum chr4LG4 1 CH_psa_103 3 6 0.0000000816266
Populus trichocarpa Chr07 1 CH_ptr_86 4 7 0.0000000000202757
Phaseolus vulgaris Chr03 1 CH_pvu_12 7 7 9.91597e-23
Quercus lobata 6 1 CH_qlo_19 12 23 3.80856e-29
Quercus lobata 1 1 CH_qlo_251 6 22 0.000000000180913
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_5 17 65 1.28035e-39
Rosa chinensis RcHm_v2.0_Chr3 1 CH_rch_696 3 8 0.000346466
Rhododendron simsii chr08 1 CH_rsi_343 2 2 0.0000645307
Salix brachista GWHAAZH00000007 1 CH_sbr_28 5 8 0.0000000000000397333
Schrenkiella parvula ch2-4 1 CH_spa_169 2 2 0.000078734
Trifolium pratense Tp57577_TGAC_v2_scaf_459 1 CH_tpr_118 3 3 0.000000481346
Trifolium pratense Tp57577_TGAC_v2_scaf_342 1 CH_tpr_166 3 5 0.00000481173
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_244 2 2 0.0000929238
Vigna mungo CM024069.1 1 CH_vmu_20 5 8 0.0000000000000439255
Vitis vinifera chr7 1 CH_vvi_123 4 9 0.0000000116362
Vitis vinifera chr10 1 CH_vvi_177 3 3 0.000000486007
Arabidopsis lyrata scaffold_8 2 CH_aly_229 2 2 0.0000660044
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.11 2 CH_arhy_163 4 8 0.000000000709842
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 2 CH_arhy_169 4 9 0.00000000127762
Arabidopsis thaliana Chr5 2 CH_ath_71 3 3 0.00000000123118
Brassica oleracea C2 2 CH_bol_408 2 2 0.000686409
Brassica rapa A09 2 CH_bra_313 2 2 0.000429314
Camellia sinensis var. sinensis Chr1 2 CH_camsi_439 3 17 0.00000857422
Cannabis sativa NC_044373.1 2 CH_cansat_275 2 3 0.000196986
Capsicum annuum PGAv.1.6.scaffold836 2 CH_can_277 2 2 0.0000826105
Cicer arietinum L. Ca_LG7_v3 2 CH_car_294 2 3 0.000700425
Corylus avellana 11 2 CH_cav_257 2 2 0.0000766695
Carpinus fangiana Cfa01 2 CH_cfa_36 4 4 0.00000000000130333
Carya illinoinensis Chr01 2 CH_cil_10 12 20 1.39231e-34
Carica papaya supercontig_6 2 CH_cpa_276 2 3 0.000285185
Capsella rubella scaffold_8 2 CH_cru_265 2 2 0.0000731154
Durio zibethinus NW_019167960.1 2 CH_dzi_313 2 3 0.000417124
Erigeron canadensis Conyza_canadensis_scaffold:6 2 CH_eca_524 2 2 0.000942317
Eucalyptus grandis Chr09 2 CH_egr_345 3 3 0.00000000513834
Eutrema salsugineum scaffold_6 2 CH_esa_72 3 3 0.0000000347941
Fragaria x ananassa Fvb1-3 2 CH_fan_104 4 9 0.0000000168192
Fragaria x ananassa Fvb1-1 2 CH_fan_195 3 4 0.00000118123
Fragaria x ananassa Fvb1-2 2 CH_fan_27 6 15 0.0000000000000432019
Fragaria x ananassa Fvb1-4 2 CH_fan_56 5 16 0.000000000203682
Fragaria x ananassa Fvb1-1 2 CH_fan_85 4 6 0.0000000036053
Fragaria vesca Fvb1 2 CH_fve_2 15 43 9.9752e-39
Glycine max Gm05 2 CH_gma_192 3 3 0.000000475419
Glycine max Gm17 2 CH_gma_31 6 10 3.43826e-16
Lotus japonicus chr4 2 CH_lja_26 5 5 0.00000000000000411894
Lonicera japonica GWHAAZE00000007 2 CH_lonja_29 8 27 1.7381e-20
Lactuca sativa Lsat_1_v8_lg_9 2 CH_lsa_86 6 73 0.0000000000382996
Malus domestica Chr02 2 CH_mdo_11 9 21 1.64297e-22
Malus domestica Chr15 2 CH_mdo_26 7 15 7.58197e-17
Punica granatum NC_045129.1 2 CH_pgr_103 3 5 0.000000084452
Prunus persica Pp07 2 CH_ppe_9 10 14 5.08041e-31
Pisum sativum chr4LG4 2 CH_psa_103 3 6 0.0000000816266
Populus trichocarpa Chr07 2 CH_ptr_86 4 7 0.0000000000202757
Phaseolus vulgaris Chr03 2 CH_pvu_12 7 7 9.91597e-23
Quercus lobata 6 2 CH_qlo_19 12 23 3.80856e-29
Quercus lobata 1 2 CH_qlo_251 6 22 0.000000000180913
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_5 17 65 1.28035e-39
Rosa chinensis RcHm_v2.0_Chr3 2 CH_rch_696 3 8 0.000346466
Rhododendron simsii chr08 2 CH_rsi_343 2 2 0.0000645307
Salix brachista GWHAAZH00000007 2 CH_sbr_28 5 8 0.0000000000000397333
Schrenkiella parvula ch2-4 2 CH_spa_169 2 2 0.000078734
Trifolium pratense Tp57577_TGAC_v2_scaf_459 2 CH_tpr_118 3 3 0.000000481346
Trifolium pratense Tp57577_TGAC_v2_scaf_342 2 CH_tpr_166 3 5 0.00000481173
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_244 2 2 0.0000929238
Vigna mungo CM024069.1 2 CH_vmu_20 5 8 0.0000000000000439255
Vitis vinifera chr7 2 CH_vvi_123 4 9 0.0000000116362
Vitis vinifera chr10 2 CH_vvi_177 3 3 0.000000486007

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001