Functional clusters
Information
- Type MapMan
- Description External stimuli response.pathogen.defense mechanisms.defensin activities.defensin (PDF1)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr5 | 1 | CH_acertr_107 | 3 | 3 | 0.00000002982 |
| Aquilegia oxysepala | CHR04 | 1 | CH_aox_322 | 2 | 3 | 0.000721742 |
| Arabidopsis thaliana | Chr2 | 1 | CH_ath_403 | 2 | 2 | 0.000601633 |
| Arabidopsis thaliana | Chr5 | 1 | CH_ath_404 | 2 | 2 | 0.000601633 |
| Brassica carinata | ChrC08 | 1 | CH_bca_134 | 4 | 6 | 0.00000000170331 |
| Brassica carinata | ChrB05 | 1 | CH_bca_565 | 3 | 8 | 0.0000371686 |
| Brassica napus | A02 | 1 | CH_bna_249 | 3 | 3 | 0.000000500238 |
| Brassica napus | C02 | 1 | CH_bna_250 | 3 | 3 | 0.000000500238 |
| Brassica napus | A07 | 1 | CH_bna_298 | 3 | 4 | 0.00000200071 |
| Brassica napus | C06 | 1 | CH_bna_363 | 3 | 6 | 0.0000100012 |
| Brassica oleracea | C2 | 1 | CH_bol_84 | 3 | 3 | 0.0000000320521 |
| Brassica rapa | A02 | 1 | CH_bra_101 | 3 | 3 | 0.000000331765 |
| Brassica rapa | A07 | 1 | CH_bra_122 | 3 | 4 | 0.00000132688 |
| Citrus clementina | scaffold_8 | 1 | CH_ccl_53 | 4 | 4 | 0.00000000000165619 |
| Cardamine hirsuta | Chr2 | 1 | CH_chi_7 | 9 | 14 | 1.05735e-24 |
| Capsella rubella | scaffold_2 | 1 | CH_cru_8 | 7 | 7 | 9.53386e-21 |
| Daucus carota | DCARv2_Chr9 | 1 | CH_dca_406 | 2 | 3 | 0.000573967 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 1 | CH_eca_14 | 6 | 12 | 3.78252e-18 |
| Eutrema salsugineum | scaffold_9 | 1 | CH_esa_50 | 4 | 4 | 0.000000000166936 |
| Fragaria x ananassa | Fvb2-3 | 1 | CH_fan_352 | 2 | 2 | 0.0000555108 |
| Helianthus annuus | HanXRQChr03 | 1 | CH_han_285 | 3 | 3 | 0.000000815342 |
| Helianthus annuus | HanXRQChr16 | 1 | CH_han_30 | 8 | 34 | 2.20379e-18 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 1 | CH_lsa_29 | 6 | 9 | 4.74737e-18 |
| Medicago truncatula | chr8 | 1 | CH_mtr_9 | 12 | 20 | 7.554e-36 |
| Nicotiana tabacum | Nitab4.5_0000023 | 1 | CH_nta_25 | 3 | 3 | 0.0000000180611 |
| Petunia axillaris | Peaxi162Scf00324 | 1 | CH_pax_12 | 5 | 5 | 0.00000000000000110281 |
| Punica granatum | NC_045127.1 | 1 | CH_pgr_211 | 2 | 2 | 0.0000750356 |
| Phaseolus vulgaris | Chr05 | 1 | CH_pvu_283 | 2 | 2 | 0.0000734727 |
| Sapria himalayana | scaffold9_16683904 | 1 | CH_shi_215 | 2 | 5 | 0.000571755 |
| Solanum lycopersicum | SL4.0ch07 | 1 | CH_sly_40 | 7 | 28 | 1.37069e-16 |
| Schrenkiella parvula | ch5-7 | 1 | CH_spa_272 | 2 | 3 | 0.000708559 |
| Solanum pennellii | Spenn-ch07 | 1 | CH_spe_118 | 3 | 4 | 0.0000000118703 |
| Acer truncatum | chr5 | 2 | CH_acertr_107 | 3 | 3 | 0.00000002982 |
| Aquilegia oxysepala | CHR04 | 2 | CH_aox_322 | 2 | 3 | 0.000721742 |
| Arabidopsis thaliana | Chr2 | 2 | CH_ath_403 | 2 | 2 | 0.000601633 |
| Arabidopsis thaliana | Chr5 | 2 | CH_ath_404 | 2 | 2 | 0.000601633 |
| Brassica carinata | ChrC08 | 2 | CH_bca_134 | 4 | 6 | 0.00000000170331 |
| Brassica carinata | ChrB05 | 2 | CH_bca_565 | 3 | 8 | 0.0000371686 |
| Brassica oleracea | C2 | 2 | CH_bol_84 | 3 | 3 | 0.0000000320521 |
| Brassica rapa | A02 | 2 | CH_bra_101 | 3 | 3 | 0.000000331765 |
| Brassica rapa | A07 | 2 | CH_bra_122 | 3 | 4 | 0.00000132688 |
| Citrus clementina | scaffold_8 | 2 | CH_ccl_53 | 4 | 4 | 0.00000000000165619 |
| Cardamine hirsuta | Chr2 | 2 | CH_chi_7 | 9 | 14 | 1.05735e-24 |
| Capsella rubella | scaffold_2 | 2 | CH_cru_8 | 7 | 7 | 9.53386e-21 |
| Daucus carota | DCARv2_Chr9 | 2 | CH_dca_406 | 2 | 3 | 0.000573967 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 2 | CH_eca_14 | 6 | 12 | 3.78252e-18 |
| Eutrema salsugineum | scaffold_9 | 2 | CH_esa_50 | 4 | 4 | 0.000000000166936 |
| Fragaria x ananassa | Fvb2-3 | 2 | CH_fan_352 | 2 | 2 | 0.0000555108 |
| Helianthus annuus | HanXRQChr03 | 2 | CH_han_285 | 3 | 3 | 0.000000815342 |
| Helianthus annuus | HanXRQChr16 | 2 | CH_han_30 | 8 | 34 | 2.20379e-18 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 2 | CH_lsa_29 | 6 | 9 | 4.74737e-18 |
| Nicotiana tabacum | Nitab4.5_0000023 | 2 | CH_nta_25 | 3 | 3 | 0.0000000180611 |
| Petunia axillaris | Peaxi162Scf00324 | 2 | CH_pax_12 | 5 | 5 | 0.00000000000000110281 |
| Punica granatum | NC_045127.1 | 2 | CH_pgr_211 | 2 | 2 | 0.0000750356 |
| Phaseolus vulgaris | Chr05 | 2 | CH_pvu_283 | 2 | 2 | 0.0000734727 |
| Sapria himalayana | scaffold9_16683904 | 2 | CH_shi_215 | 2 | 5 | 0.000571755 |
| Solanum lycopersicum | SL4.0ch07 | 2 | CH_sly_40 | 7 | 28 | 1.37069e-16 |
| Schrenkiella parvula | ch5-7 | 2 | CH_spa_272 | 2 | 3 | 0.000708559 |
| Solanum pennellii | Spenn-ch07 | 2 | CH_spe_118 | 3 | 4 | 0.0000000118703 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |