Functional clusters

Information

  • Type MapMan
  • Description External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).pipecolic acid metabolism.pipecolate N-hydroxylase (FMO1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC07 1 CH_bca_1041 2 3 0.000641272
Brassica rapa A09 1 CH_bra_260 2 2 0.000257588
Quercus lobata 11 1 CH_qlo_477 3 11 0.000000659603
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_217 2 2 0.0000929238
Brassica carinata ChrC07 2 CH_bca_1041 2 3 0.000641272
Brassica rapa A09 2 CH_bra_260 2 2 0.000257588
Quercus lobata 11 2 CH_qlo_477 3 11 0.000000659603
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_217 2 2 0.0000929238

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001