Functional clusters
Information
- Type MapMan
- Description External stimuli response.pathogen.defense mechanisms.defensin activities.defensin (PDF2)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-2 | 1 | CH_aar_239 | 2 | 2 | 0.000547395 |
| Acer truncatum | chr11 | 1 | CH_acertr_474 | 2 | 4 | 0.000422952 |
| Arabidopsis lyrata | scaffold_5 | 1 | CH_aly_25 | 5 | 5 | 0.000000000000035879 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 1 | CH_arhy_635 | 2 | 2 | 0.000449075 |
| Arabidopsis thaliana | Chr2 | 1 | CH_ath_37 | 5 | 19 | 0.00000000000739684 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 1 | CH_bvu_22 | 5 | 5 | 0.0000000000000197381 |
| Cannabis sativa | NC_044376.1 | 1 | CH_cansat_294 | 2 | 2 | 0.000196993 |
| Capsicum annuum | PGAv.1.6.scaffold1084 | 1 | CH_can_237 | 3 | 5 | 0.0000572772 |
| Capsicum annuum | PGAv.1.6.scaffold584 | 1 | CH_can_55 | 5 | 6 | 0.00000000000915295 |
| Coffea canephora | chr6 | 1 | CH_ccan_222 | 2 | 3 | 0.00007666 |
| Ceratophyllum demersum | 2 | 1 | CH_cde_10 | 4 | 6 | 0.000000000110845 |
| Cardamine hirsuta | Chr5 | 1 | CH_chi_11 | 7 | 7 | 1.03109e-21 |
| Carya illinoinensis | Chr04 | 1 | CH_cil_357 | 2 | 2 | 0.0000619828 |
| Cucumis melo | chr09 | 1 | CH_cme_238 | 2 | 2 | 0.000200133 |
| Capsella rubella | scaffold_5 | 1 | CH_cru_35 | 5 | 6 | 0.0000000000000720239 |
| Daucus carota | DCARv2_Chr8 | 1 | CH_dca_361 | 2 | 2 | 0.000382665 |
| Durio zibethinus | NW_019168048.1 | 1 | CH_dzi_357 | 2 | 2 | 0.000695233 |
| Erythranthe guttata | scaffold_13 | 1 | CH_egut_117 | 4 | 4 | 0.00000000354443 |
| Erythranthe guttata | scaffold_5 | 1 | CH_egut_130 | 4 | 5 | 0.0000000177143 |
| Erythranthe guttata | scaffold_8 | 1 | CH_egut_225 | 3 | 3 | 0.00000648985 |
| Eutrema salsugineum | scaffold_6 | 1 | CH_esa_93 | 3 | 3 | 0.000000304449 |
| Fragaria x ananassa | Fvb3-3 | 1 | CH_fan_187 | 3 | 3 | 0.000000790914 |
| Fragaria vesca | Fvb3 | 1 | CH_fve_73 | 5 | 17 | 0.000000000257733 |
| Gossypium hirsutum | D01 | 1 | CH_ghi_346 | 3 | 3 | 0.00000189404 |
| Gossypium hirsutum | D01 | 1 | CH_ghi_45 | 6 | 6 | 3.08331e-17 |
| Gossypium hirsutum | A01 | 1 | CH_ghi_86 | 5 | 6 | 0.000000000000769614 |
| Glycine max | Gm06 | 1 | CH_gma_604 | 2 | 2 | 0.00079707 |
| Gossypium raimondii | Chr02 | 1 | CH_gra_169 | 3 | 3 | 0.00000071136 |
| Gossypium raimondii | Chr02 | 1 | CH_gra_35 | 5 | 5 | 0.0000000000000286272 |
| Hydrangea macrophylla | Hma1.2p1_0383F.1 | 1 | CH_hma_349 | 2 | 2 | 0.000333259 |
| Lupinus albus | Lalb_Chr12 | 1 | CH_lal_114 | 4 | 16 | 0.00000143182 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 1 | CH_lsa_496 | 2 | 2 | 0.000514007 |
| Malus domestica | Chr16 | 1 | CH_mdo_153 | 4 | 4 | 0.00000000448354 |
| Malus domestica | Chr13 | 1 | CH_mdo_8 | 9 | 11 | 4.76864e-24 |
| Manihot esculenta | Chromosome18 | 1 | CH_mes_462 | 2 | 2 | 0.000610631 |
| Medicago truncatula | chr8 | 1 | CH_mtr_313 | 3 | 3 | 0.000000303862 |
| Medicago truncatula | chr3 | 1 | CH_mtr_365 | 3 | 4 | 0.00000121529 |
| Nelumbo nucifera | chr7 | 1 | CH_nnu_93 | 3 | 3 | 0.0000000570339 |
| Olea europaea | chr20 | 1 | CH_oeu_169 | 2 | 2 | 0.0000533789 |
| Petunia axillaris | Peaxi162Scf00088 | 1 | CH_pax_129 | 3 | 4 | 0.00000166295 |
| Prunus persica | Pp01 | 1 | CH_ppe_242 | 3 | 3 | 0.00000303839 |
| Prunus persica | Pp07 | 1 | CH_ppe_34 | 7 | 7 | 4.65954e-20 |
| Pisum sativum | chr4LG4 | 1 | CH_psa_39 | 5 | 17 | 0.0000000000432441 |
| Populus trichocarpa | scaffold_25 | 1 | CH_ptr_379 | 2 | 2 | 0.0001734 |
| Phaseolus vulgaris | Chr02 | 1 | CH_pvu_153 | 3 | 3 | 0.000000283418 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 1 | CH_rch_117 | 5 | 10 | 0.00000000000377852 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_367 | 3 | 4 | 0.00000209751 |
| Salvia bowleyana | GWHASIU00000004 | 1 | CH_sbo_42 | 7 | 40 | 0.000000000000016666 |
| Sapria himalayana | scaffold7_18583372 | 1 | CH_shi_158 | 2 | 3 | 0.000171536 |
| Solanum lycopersicum | SL4.0ch07 | 1 | CH_sly_451 | 3 | 10 | 0.000346499 |
| Solanum lycopersicum | SL4.0ch07 | 1 | CH_sly_74 | 5 | 7 | 0.00000000000816126 |
| Schrenkiella parvula | ch2-4 | 1 | CH_spa_32 | 4 | 4 | 0.0000000000014644 |
| Solanum pennellii | Spenn-ch07 | 1 | CH_spe_84 | 4 | 5 | 0.000000000943655 |
| Selenicereus undatus | Scaffold_10417 | 1 | CH_sun_84 | 3 | 8 | 0.0000155126 |
| Aethionema arabicum | LG-2 | 2 | CH_aar_239 | 2 | 2 | 0.000547395 |
| Acer truncatum | chr11 | 2 | CH_acertr_474 | 2 | 4 | 0.000422952 |
| Arabidopsis lyrata | scaffold_5 | 2 | CH_aly_25 | 5 | 5 | 0.000000000000035879 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 2 | CH_arhy_635 | 2 | 2 | 0.000449075 |
| Arabidopsis thaliana | Chr2 | 2 | CH_ath_37 | 5 | 19 | 0.00000000000739684 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 2 | CH_bvu_22 | 5 | 5 | 0.0000000000000197381 |
| Cannabis sativa | NC_044376.1 | 2 | CH_cansat_294 | 2 | 2 | 0.000196993 |
| Capsicum annuum | PGAv.1.6.scaffold1084 | 2 | CH_can_237 | 3 | 5 | 0.0000572772 |
| Capsicum annuum | PGAv.1.6.scaffold584 | 2 | CH_can_55 | 5 | 6 | 0.00000000000915295 |
| Coffea canephora | chr6 | 2 | CH_ccan_222 | 2 | 3 | 0.00007666 |
| Ceratophyllum demersum | 2 | 2 | CH_cde_10 | 4 | 6 | 0.000000000110845 |
| Cardamine hirsuta | Chr5 | 2 | CH_chi_11 | 7 | 7 | 1.03109e-21 |
| Carya illinoinensis | Chr04 | 2 | CH_cil_357 | 2 | 2 | 0.0000619828 |
| Cucumis melo | chr09 | 2 | CH_cme_238 | 2 | 2 | 0.000200133 |
| Capsella rubella | scaffold_5 | 2 | CH_cru_35 | 5 | 6 | 0.0000000000000720239 |
| Daucus carota | DCARv2_Chr8 | 2 | CH_dca_361 | 2 | 2 | 0.000382665 |
| Durio zibethinus | NW_019168048.1 | 2 | CH_dzi_357 | 2 | 2 | 0.000695233 |
| Eucalyptus grandis | Chr02 | 2 | CH_egr_835 | 2 | 2 | 0.000351165 |
| Erythranthe guttata | scaffold_13 | 2 | CH_egut_117 | 4 | 4 | 0.00000000354443 |
| Erythranthe guttata | scaffold_5 | 2 | CH_egut_130 | 4 | 5 | 0.0000000177143 |
| Erythranthe guttata | scaffold_8 | 2 | CH_egut_225 | 3 | 3 | 0.00000648985 |
| Eutrema salsugineum | scaffold_6 | 2 | CH_esa_93 | 3 | 3 | 0.000000304449 |
| Fragaria x ananassa | Fvb3-3 | 2 | CH_fan_187 | 3 | 3 | 0.000000790914 |
| Fragaria vesca | Fvb3 | 2 | CH_fve_73 | 5 | 17 | 0.000000000257733 |
| Gossypium hirsutum | D01 | 2 | CH_ghi_346 | 3 | 3 | 0.00000189404 |
| Gossypium hirsutum | D01 | 2 | CH_ghi_45 | 6 | 6 | 3.08331e-17 |
| Gossypium hirsutum | A01 | 2 | CH_ghi_86 | 5 | 6 | 0.000000000000769614 |
| Glycine max | Gm06 | 2 | CH_gma_604 | 2 | 2 | 0.00079707 |
| Gossypium raimondii | Chr02 | 2 | CH_gra_169 | 3 | 3 | 0.00000071136 |
| Gossypium raimondii | Chr02 | 2 | CH_gra_35 | 5 | 5 | 0.0000000000000286272 |
| Hydrangea macrophylla | Hma1.2p1_0383F.1 | 2 | CH_hma_349 | 2 | 2 | 0.000333259 |
| Lupinus albus | Lalb_Chr12 | 2 | CH_lal_114 | 4 | 16 | 0.00000143182 |
| Lotus japonicus | chr1 | 2 | CH_lja_370 | 2 | 2 | 0.000429046 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 2 | CH_lsa_496 | 2 | 2 | 0.000514007 |
| Malus domestica | Chr16 | 2 | CH_mdo_153 | 4 | 4 | 0.00000000448354 |
| Malus domestica | Chr13 | 2 | CH_mdo_8 | 9 | 11 | 4.76864e-24 |
| Manihot esculenta | Chromosome18 | 2 | CH_mes_462 | 2 | 2 | 0.000610631 |
| Nelumbo nucifera | chr7 | 2 | CH_nnu_93 | 3 | 3 | 0.0000000570339 |
| Olea europaea | chr20 | 2 | CH_oeu_169 | 2 | 2 | 0.0000533789 |
| Petunia axillaris | Peaxi162Scf00088 | 2 | CH_pax_129 | 3 | 4 | 0.00000166295 |
| Prunus persica | Pp01 | 2 | CH_ppe_242 | 3 | 3 | 0.00000303839 |
| Prunus persica | Pp07 | 2 | CH_ppe_34 | 7 | 7 | 4.65954e-20 |
| Pisum sativum | chr4LG4 | 2 | CH_psa_39 | 5 | 17 | 0.0000000000432441 |
| Populus trichocarpa | scaffold_25 | 2 | CH_ptr_379 | 2 | 2 | 0.0001734 |
| Phaseolus vulgaris | Chr02 | 2 | CH_pvu_153 | 3 | 3 | 0.000000283418 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 2 | CH_rch_117 | 5 | 10 | 0.00000000000377852 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_367 | 3 | 4 | 0.00000209751 |
| Salvia bowleyana | GWHASIU00000004 | 2 | CH_sbo_42 | 7 | 40 | 0.000000000000016666 |
| Sapria himalayana | scaffold7_18583372 | 2 | CH_shi_158 | 2 | 3 | 0.000171536 |
| Solanum lycopersicum | SL4.0ch07 | 2 | CH_sly_451 | 3 | 10 | 0.000346499 |
| Solanum lycopersicum | SL4.0ch07 | 2 | CH_sly_74 | 5 | 7 | 0.00000000000816126 |
| Schrenkiella parvula | ch2-4 | 2 | CH_spa_32 | 4 | 4 | 0.0000000000014644 |
| Solanum pennellii | Spenn-ch07 | 2 | CH_spe_84 | 4 | 5 | 0.000000000943655 |
| Selenicereus undatus | Scaffold_10417 | 2 | CH_sun_84 | 3 | 8 | 0.0000155126 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |