Functional clusters

Information

  • Type MapMan
  • Description External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).regulatory protein (CBP60/SARD)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr2 1 CH_acertr_518 3 21 0.000553577
Actinidia chinensis Lachesis_group1 1 CH_ach_164 3 7 0.000205721
Actinidia chinensis Lachesis_group13 1 CH_ach_75 3 4 0.0000235387
Avicennia marina ScioBoG_3703_HRSCAF_3719 1 CH_ama_65 3 6 0.00010135
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 1 CH_amhyb_61 3 3 0.00000127543
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 1 CH_arhy_109 5 6 0.00000000000153632
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 1 CH_arhy_164 4 4 0.000000000855447
Beta vulgaris Chr4_EL10_PGA_scaffold1 1 CH_bvu_33 6 26 0.00000000000927256
Camellia sinensis var. sinensis Chr15 1 CH_camsi_21 9 20 4.29095e-22
Capsicum annuum PGAv.1.6.scaffold853 1 CH_can_102 4 7 0.0000000124238
Carya illinoinensis Chr15 1 CH_cil_151 4 4 0.000000000510836
Citrullus lanatus CG_Chr03 1 CH_cla_5 9 22 2.48706e-19
Cucumis melo chr02 1 CH_cme_12 8 21 4.84283e-19
Chenopodium quinoa C_Quinoa_Scaffold_2088 1 CH_cqu_214 3 3 0.00000122584
Chenopodium quinoa C_Quinoa_Scaffold_3820 1 CH_cqu_215 3 3 0.00000122584
Cucumis sativus L. chr5 1 CH_csa_162 3 3 0.0000101287
Cucumis sativus L. chr1 1 CH_csa_6 11 24 1.20506e-25
Daucus carota DCARv2_Chr5 1 CH_dca_143 3 3 0.00000100676
Eucalyptus grandis Chr05 1 CH_egr_121 8 13 2.23776e-17
Glycine max Gm03 1 CH_gma_238 3 3 0.000002094
Lactuca sativa Lsat_1_v8_lg_1 1 CH_lsa_153 4 6 0.0000000186897
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_288 3 4 0.0000129316
Magnolia biondii Chr14 1 CH_mbi_174 4 20 0.000000220413
Medicago truncatula chr7 1 CH_mtr_385 3 4 0.00000222796
Olea europaea chr18 1 CH_oeu_104 3 4 0.00000376041
Oryza sativa ssp. japonica chr11 1 CH_osa_75 5 23 0.000000012087
Petunia axillaris Peaxi162Scf00017 1 CH_pax_54 4 5 0.00000000373435
Punica granatum NC_045132.1 1 CH_pgr_59 5 7 0.000000000167841
Phaseolus vulgaris Chr01 1 CH_pvu_180 3 3 0.000000971718
Quercus lobata 10 1 CH_qlo_742 3 13 0.000137004
Rhododendron simsii chr08 1 CH_rsi_121 4 4 0.00000000110051
Salvia bowleyana GWHASIU00000003 1 CH_sbo_69 5 10 0.00000000000641028
Sechium edule LG04 1 CH_sed_17 6 6 7.13805e-17
Solanum lycopersicum SL4.0ch03 1 CH_sly_39 6 7 1.01385e-16
Solanum pennellii Spenn-ch03 1 CH_spe_27 6 7 2.53377e-17
Solanum tuberosum ST4.03ch03 1 CH_stu_72 5 7 0.000000000000860073
Selenicereus undatus Scaffold_33680 1 CH_sun_27 4 7 0.0000000199272
Trifolium pratense Tp57577_TGAC_v2_LG6 1 CH_tpr_151 3 4 0.00000288747
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_44 5 6 0.00000000000671637
Vigna mungo CM024070.1 1 CH_vmu_45 4 4 0.000000000400636
Vitis vinifera chr17 1 CH_vvi_187 3 3 0.00000072901
Acer truncatum chr2 2 CH_acertr_518 3 21 0.000553577
Actinidia chinensis Lachesis_group1 2 CH_ach_164 3 7 0.000205721
Actinidia chinensis Lachesis_group13 2 CH_ach_75 3 4 0.0000235387
Avicennia marina ScioBoG_3703_HRSCAF_3719 2 CH_ama_65 3 6 0.00010135
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 2 CH_amhyb_61 3 3 0.00000127543
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 2 CH_arhy_109 5 6 0.00000000000153632
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 2 CH_arhy_164 4 4 0.000000000855447
Beta vulgaris Chr4_EL10_PGA_scaffold1 2 CH_bvu_33 6 26 0.00000000000927256
Camellia sinensis var. sinensis Chr15 2 CH_camsi_21 9 20 4.29095e-22
Capsicum annuum PGAv.1.6.scaffold853 2 CH_can_102 4 7 0.0000000124238
Carya illinoinensis Chr15 2 CH_cil_151 4 4 0.000000000510836
Citrullus lanatus CG_Chr03 2 CH_cla_5 9 22 2.48706e-19
Cucumis melo chr02 2 CH_cme_12 8 21 4.84283e-19
Chenopodium quinoa C_Quinoa_Scaffold_2088 2 CH_cqu_214 3 3 0.00000122584
Chenopodium quinoa C_Quinoa_Scaffold_3820 2 CH_cqu_215 3 3 0.00000122584
Cucumis sativus L. chr5 2 CH_csa_162 3 3 0.0000101287
Cucumis sativus L. chr1 2 CH_csa_6 11 24 1.20506e-25
Daucus carota DCARv2_Chr5 2 CH_dca_143 3 3 0.00000100676
Eucalyptus grandis Chr05 2 CH_egr_121 8 13 2.23776e-17
Eucalyptus grandis Chr01 2 CH_egr_366 5 11 0.0000000131409
Glycine max Gm03 2 CH_gma_238 3 3 0.000002094
Lactuca sativa Lsat_1_v8_lg_1 2 CH_lsa_153 4 6 0.0000000186897
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_288 3 4 0.0000129316
Magnolia biondii Chr14 2 CH_mbi_174 4 20 0.000000220413
Olea europaea chr18 2 CH_oeu_104 3 4 0.00000376041
Oryza sativa ssp. japonica chr11 2 CH_osa_75 5 23 0.000000012087
Petunia axillaris Peaxi162Scf00017 2 CH_pax_54 4 5 0.00000000373435
Punica granatum NC_045132.1 2 CH_pgr_59 5 7 0.000000000167841
Phaseolus vulgaris Chr01 2 CH_pvu_180 3 3 0.000000971718
Quercus lobata 10 2 CH_qlo_742 3 13 0.000137004
Rhododendron simsii chr08 2 CH_rsi_121 4 4 0.00000000110051
Salvia bowleyana GWHASIU00000003 2 CH_sbo_69 5 10 0.00000000000641028
Sechium edule LG04 2 CH_sed_17 6 6 7.13805e-17
Solanum lycopersicum SL4.0ch03 2 CH_sly_39 6 7 1.01385e-16
Solanum pennellii Spenn-ch03 2 CH_spe_27 6 7 2.53377e-17
Solanum tuberosum ST4.03ch03 2 CH_stu_72 5 7 0.000000000000860073
Selenicereus undatus Scaffold_33680 2 CH_sun_27 4 7 0.0000000199272
Trifolium pratense Tp57577_TGAC_v2_LG6 2 CH_tpr_151 3 4 0.00000288747
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_44 5 6 0.00000000000671637
Vigna mungo CM024070.1 2 CH_vmu_45 4 4 0.000000000400636
Vitis vinifera chr17 2 CH_vvi_187 3 3 0.00000072901

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001