Functional clusters

Information

  • Type MapMan
  • Description External stimuli response.symbiont

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr3 1 CH_acertr_379 4 16 0.000211313
Acer truncatum chr3 2 CH_acertr_379 4 16 0.000211313

Available child term results

Ontology identifier Description Number of clusters
26.10.1 External stimuli response.symbiont.symbiosis signalling pathway 6
26.10.1.1 External stimuli response.symbiont.symbiosis signalling pathway.LysM receptor kinase (NFR1/LYK3) 20
26.10.1.10 External stimuli response.symbiont.symbiosis signalling pathway.symbiosis factor (VAPYRIN) 1
26.10.1.11 External stimuli response.symbiont.symbiosis signalling pathway.infection-specific kinase (RINRK) 4
26.10.1.2 External stimuli response.symbiont.symbiosis signalling pathway.LysM receptor kinase (NFR5/NFP) 2
26.10.1.4 External stimuli response.symbiont.symbiosis signalling pathway.calcium cation channel (DMI1/Pollux/Castor) 2
26.10.1.5.1 External stimuli response.symbiont.symbiosis signalling pathway.CCaMK-IPD3 kinase complex.component CCaMK 4
26.10.1.5.2 External stimuli response.symbiont.symbiosis signalling pathway.CCaMK-IPD3 kinase complex.component IPD3/CYCLOPS 10
26.10.1.6.1 External stimuli response.symbiont.symbiosis signalling pathway.NSP1-NSP2 nodulation initiation complex.component NSP1 6
26.10.1.6.2 External stimuli response.symbiont.symbiosis signalling pathway.NSP1-NSP2 nodulation initiation complex.component NSP2 10
26.10.1.8 External stimuli response.symbiont.symbiosis signalling pathway.transcription factor (NIN) 2
26.10.2.1 External stimuli response.symbiont.arbuscule branching.GRAS transcription factor (RAM1) 2
26.10.2.2 External stimuli response.symbiont.arbuscule branching.RAM1-dependent transcription factor (WRI5) 6
26.10.2.4 External stimuli response.symbiont.arbuscule branching.transcription factor (MIG1) 77
26.10.3.1 External stimuli response.symbiont.lipid biosynthesis.palmitoyl-ACP thioesterase (FatM) 2
26.10.3.2 External stimuli response.symbiont.lipid biosynthesis.glycerol-3-phosphate acyl transferase (RAM2) 4
26.10.4.1 External stimuli response.symbiont.solute transport.lipid transporter (STR) 2
26.10.4.2 External stimuli response.symbiont.solute transport.phosphate transporter (PT4) 22

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001