Functional clusters

Information

  • Type MapMan
  • Description External stimuli response.toxic compounds.arsenic.glutathione-mediated detoxification.phytochelatin synthase (PCS)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr5 1 CH_acertr_306 2 2 0.000070497
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 1 CH_arhy_742 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 1 CH_arhy_743 2 2 0.000838273
Brassica carinata ChrC04 1 CH_bca_1094 2 2 0.000769551
Brassica oleracea C9 1 CH_bol_439 2 3 0.000980536
Brassica rapa A09 1 CH_bra_312 2 2 0.000429314
Beta vulgaris Chr7_EL10_PGA_scaffold5 1 CH_bvu_78 3 4 0.0000000411268
Camellia sinensis var. sinensis Chr3 1 CH_camsi_400 3 6 0.00000353139
Cannabis sativa NC_044373.1 1 CH_cansat_293 2 2 0.000196993
Cicer arietinum L. Ca_LG3_v3 1 CH_car_34 4 30 0.0000000387262
Citrus clementina scaffold_3 1 CH_ccl_68 4 7 0.0000000000579595
Carpinus fangiana Cfa01 1 CH_cfa_278 2 3 0.000227195
Cardamine hirsuta Chr6 1 CH_chi_302 2 2 0.000207361
Carya illinoinensis Chr03 1 CH_cil_355 2 2 0.0000619828
Cucumis melo chr11 1 CH_cme_301 2 2 0.000667111
Cucumis melo chr05 1 CH_cme_302 2 2 0.000667111
Carica papaya supercontig_165 1 CH_cpa_215 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_1710 1 CH_cqu_142 3 3 0.0000000673536
Chenopodium quinoa C_Quinoa_Scaffold_2773 1 CH_cqu_172 3 4 0.000000269394
Cucumis sativus L. chr6 1 CH_csa_264 2 2 0.000250428
Durio zibethinus NW_019167893.1 1 CH_dzi_190 2 2 0.0000463489
Eucalyptus grandis Chr08 1 CH_egr_206 4 4 0.000000000000601504
Eutrema salsugineum scaffold_17 1 CH_esa_246 2 2 0.00022845
Fragaria x ananassa Fvb2-2 1 CH_fan_467 2 2 0.000277554
Fragaria x ananassa Fvb2-1 1 CH_fan_468 2 2 0.000277554
Fragaria vesca Fvb2 1 CH_fve_145 3 7 0.00000018218
Glycine max Gm03 1 CH_gma_379 2 2 0.000113867
Lupinus albus Lalb_Chr20 1 CH_lal_201 2 2 0.0000524824
Lotus japonicus chr1 1 CH_lja_113 3 3 0.0000000767031
Lonicera japonica GWHAAZE00000002 1 CH_lonja_201 3 6 0.000000107589
Malus domestica Chr05 1 CH_mdo_473 2 2 0.000113763
Medicago truncatula chr7 1 CH_mtr_522 2 2 0.0000410863
Olea europaea chr13 1 CH_oeu_354 2 3 0.000480389
Populus trichocarpa Chr14 1 CH_ptr_308 2 2 0.0000578001
Phaseolus vulgaris Chr01 1 CH_pvu_281 2 2 0.0000734727
Quercus lobata 9 1 CH_qlo_668 2 2 0.0000516289
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_480 2 2 0.0000398653
Rhododendron simsii chr13 1 CH_rsi_408 2 3 0.000193586
Salix brachista GWHAAZH00000014 1 CH_sbr_223 2 2 0.000063014
Sechium edule LG07 1 CH_sed_202 2 2 0.0000713419
Schrenkiella parvula ch2-4 1 CH_spa_221 2 2 0.000236202
Selenicereus undatus Scaffold_19641 1 CH_sun_181 2 3 0.000217984
Trochodendron aralioides group1 1 CH_tar_90 4 14 0.00000000974082
Theobroma cacao Chromosome_1 1 CH_tca_285 2 2 0.0000732386
Trifolium pratense Tp57577_TGAC_v2_LG6 1 CH_tpr_100 3 3 0.000000171909
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_242 2 2 0.0000929238
Vigna mungo CM024070.1 1 CH_vmu_201 2 2 0.0000646141
Acer truncatum chr5 2 CH_acertr_306 2 2 0.000070497
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 2 CH_arhy_742 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 2 CH_arhy_743 2 2 0.000838273
Brassica carinata ChrC04 2 CH_bca_1094 2 2 0.000769551
Brassica oleracea C9 2 CH_bol_439 2 3 0.000980536
Brassica rapa A09 2 CH_bra_312 2 2 0.000429314
Beta vulgaris Chr7_EL10_PGA_scaffold5 2 CH_bvu_78 3 4 0.0000000411268
Camellia sinensis var. sinensis Chr3 2 CH_camsi_400 3 6 0.00000353139
Cannabis sativa NC_044373.1 2 CH_cansat_293 2 2 0.000196993
Cicer arietinum L. Ca_LG3_v3 2 CH_car_34 4 30 0.0000000387262
Citrus clementina scaffold_3 2 CH_ccl_68 4 7 0.0000000000579595
Carpinus fangiana Cfa01 2 CH_cfa_278 2 3 0.000227195
Cardamine hirsuta Chr6 2 CH_chi_302 2 2 0.000207361
Carya illinoinensis Chr03 2 CH_cil_355 2 2 0.0000619828
Cucumis melo chr11 2 CH_cme_301 2 2 0.000667111
Cucumis melo chr05 2 CH_cme_302 2 2 0.000667111
Carica papaya supercontig_165 2 CH_cpa_215 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_1710 2 CH_cqu_142 3 3 0.0000000673536
Chenopodium quinoa C_Quinoa_Scaffold_2773 2 CH_cqu_172 3 4 0.000000269394
Cucumis sativus L. chr6 2 CH_csa_264 2 2 0.000250428
Durio zibethinus NW_019167893.1 2 CH_dzi_190 2 2 0.0000463489
Eucalyptus grandis Chr08 2 CH_egr_206 4 4 0.000000000000601504
Eutrema salsugineum scaffold_17 2 CH_esa_246 2 2 0.00022845
Fragaria x ananassa Fvb2-2 2 CH_fan_467 2 2 0.000277554
Fragaria x ananassa Fvb2-1 2 CH_fan_468 2 2 0.000277554
Fragaria vesca Fvb2 2 CH_fve_145 3 7 0.00000018218
Glycine max Gm03 2 CH_gma_379 2 2 0.000113867
Lupinus albus Lalb_Chr20 2 CH_lal_201 2 2 0.0000524824
Lotus japonicus chr1 2 CH_lja_113 3 3 0.0000000767031
Lonicera japonica GWHAAZE00000002 2 CH_lonja_201 3 6 0.000000107589
Malus domestica Chr05 2 CH_mdo_473 2 2 0.000113763
Olea europaea chr13 2 CH_oeu_354 2 3 0.000480389
Populus trichocarpa Chr14 2 CH_ptr_308 2 2 0.0000578001
Phaseolus vulgaris Chr01 2 CH_pvu_281 2 2 0.0000734727
Quercus lobata 9 2 CH_qlo_668 2 2 0.0000516289
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_480 2 2 0.0000398653
Rhododendron simsii chr13 2 CH_rsi_408 2 3 0.000193586
Salix brachista GWHAAZH00000014 2 CH_sbr_223 2 2 0.000063014
Sechium edule LG07 2 CH_sed_202 2 2 0.0000713419
Schrenkiella parvula ch2-4 2 CH_spa_221 2 2 0.000236202
Selenicereus undatus Scaffold_19641 2 CH_sun_181 2 3 0.000217984
Trochodendron aralioides group1 2 CH_tar_90 4 14 0.00000000974082
Theobroma cacao Chromosome_1 2 CH_tca_285 2 2 0.0000732386
Trifolium pratense Tp57577_TGAC_v2_LG6 2 CH_tpr_100 3 3 0.000000171909
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_242 2 2 0.0000929238
Vigna mungo CM024070.1 2 CH_vmu_201 2 2 0.0000646141

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001