Functional clusters

Information

  • Type MapMan
  • Description External stimuli response.pathogen.effector-triggered immunity (ETI) network.EDS1-PAD4/SAG101 signalling heterodimers.component EDS1

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_5 1 CH_aly_230 2 2 0.0000660044
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 1 CH_arhy_218 3 3 0.0000000752906
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 1 CH_arhy_253 3 4 0.000000301141
Arabidopsis thaliana Chr3 1 CH_ath_220 2 2 0.0000286492
Brassica napus C01 1 CH_bna_191 3 4 0.0000000722712
Brassica rapa A01 1 CH_bra_267 2 2 0.000257588
Corylus avellana 4 1 CH_cav_259 2 2 0.0000766695
Citrus clementina scaffold_5 1 CH_ccl_201 3 6 0.00000201819
Carpinus fangiana Cfa08 1 CH_cfa_90 3 4 0.0000000344144
Cardamine hirsuta Chr5 1 CH_chi_234 2 2 0.0000691204
Carya illinoinensis Chr11 1 CH_cil_58 5 5 6.64322e-16
Daucus carota DCARv2_Chr7 1 CH_dca_472 2 2 0.000956663
Eucalyptus grandis Chr11 1 CH_egr_92 6 7 1.08191e-19
Glycine max Gm06 1 CH_gma_136 3 3 0.0000000216099
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_397 2 2 0.000154202
Malus domestica Chr14 1 CH_mdo_644 2 2 0.000379212
Punica granatum NC_045134.1 1 CH_pgr_325 2 2 0.000450214
Prunus persica Pp05 1 CH_ppe_184 3 4 0.000000133547
Populus trichocarpa Chr12 1 CH_ptr_501 2 2 0.000578001
Phaseolus vulgaris Chr09 1 CH_pvu_355 2 2 0.000220418
Quercus lobata 10 1 CH_qlo_257 4 9 0.00000000026006
Sechium edule LG08 1 CH_sed_255 2 2 0.000214026
Sequoiadendron giganteum chr1 1 CH_sgi_1005 3 6 0.000143926
Sequoiadendron giganteum chr5 1 CH_sgi_498 4 6 0.000000055239
Sequoiadendron giganteum chr4 1 CH_sgi_499 4 6 0.000000055239
Vigna mungo CM024072.1 1 CH_vmu_286 2 2 0.000193842
Vitis vinifera chr17 1 CH_vvi_129 4 18 0.0000000201821
Arabidopsis lyrata scaffold_5 2 CH_aly_230 2 2 0.0000660044
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 2 CH_arhy_218 3 3 0.0000000752906
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 2 CH_arhy_253 3 4 0.000000301141
Arabidopsis thaliana Chr3 2 CH_ath_220 2 2 0.0000286492
Brassica rapa A01 2 CH_bra_267 2 2 0.000257588
Corylus avellana 4 2 CH_cav_259 2 2 0.0000766695
Citrus clementina scaffold_5 2 CH_ccl_201 3 6 0.00000201819
Carpinus fangiana Cfa08 2 CH_cfa_90 3 4 0.0000000344144
Cardamine hirsuta Chr5 2 CH_chi_234 2 2 0.0000691204
Carya illinoinensis Chr11 2 CH_cil_58 5 5 6.64322e-16
Daucus carota DCARv2_Chr7 2 CH_dca_472 2 2 0.000956663
Eucalyptus grandis Chr11 2 CH_egr_92 6 7 1.08191e-19
Glycine max Gm06 2 CH_gma_136 3 3 0.0000000216099
Lotus japonicus chr1 2 CH_lja_268 2 2 0.0000715077
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_397 2 2 0.000154202
Malus domestica Chr14 2 CH_mdo_644 2 2 0.000379212
Punica granatum NC_045134.1 2 CH_pgr_325 2 2 0.000450214
Prunus persica Pp05 2 CH_ppe_184 3 4 0.000000133547
Populus trichocarpa Chr12 2 CH_ptr_501 2 2 0.000578001
Phaseolus vulgaris Chr09 2 CH_pvu_355 2 2 0.000220418
Quercus lobata 10 2 CH_qlo_257 4 9 0.00000000026006
Sechium edule LG08 2 CH_sed_255 2 2 0.000214026
Sequoiadendron giganteum chr1 2 CH_sgi_1005 3 6 0.000143926
Sequoiadendron giganteum chr5 2 CH_sgi_498 4 6 0.000000055239
Sequoiadendron giganteum chr4 2 CH_sgi_499 4 6 0.000000055239
Vigna mungo CM024072.1 2 CH_vmu_286 2 2 0.000193842
Vitis vinifera chr17 2 CH_vvi_129 4 18 0.0000000201821

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001