Functional clusters
Information
- Type MapMan
- Description External stimuli response.pathogen.effector-triggered immunity (ETI) network.EDS1-PAD4/SAG101 signalling heterodimers.component EDS1
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis lyrata | scaffold_5 | 1 | CH_aly_230 | 2 | 2 | 0.0000660044 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.05 | 1 | CH_arhy_218 | 3 | 3 | 0.0000000752906 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 1 | CH_arhy_253 | 3 | 4 | 0.000000301141 |
Arabidopsis thaliana | Chr3 | 1 | CH_ath_220 | 2 | 2 | 0.0000286492 |
Brassica napus | C01 | 1 | CH_bna_191 | 3 | 4 | 0.0000000722712 |
Brassica rapa | A01 | 1 | CH_bra_267 | 2 | 2 | 0.000257588 |
Corylus avellana | 4 | 1 | CH_cav_259 | 2 | 2 | 0.0000766695 |
Citrus clementina | scaffold_5 | 1 | CH_ccl_201 | 3 | 6 | 0.00000201819 |
Carpinus fangiana | Cfa08 | 1 | CH_cfa_90 | 3 | 4 | 0.0000000344144 |
Cardamine hirsuta | Chr5 | 1 | CH_chi_234 | 2 | 2 | 0.0000691204 |
Carya illinoinensis | Chr11 | 1 | CH_cil_58 | 5 | 5 | 6.64322e-16 |
Daucus carota | DCARv2_Chr7 | 1 | CH_dca_472 | 2 | 2 | 0.000956663 |
Eucalyptus grandis | Chr11 | 1 | CH_egr_92 | 6 | 7 | 1.08191e-19 |
Glycine max | Gm06 | 1 | CH_gma_136 | 3 | 3 | 0.0000000216099 |
Lactuca sativa | Lsat_1_v8_lg_5 | 1 | CH_lsa_397 | 2 | 2 | 0.000154202 |
Malus domestica | Chr14 | 1 | CH_mdo_644 | 2 | 2 | 0.000379212 |
Punica granatum | NC_045134.1 | 1 | CH_pgr_325 | 2 | 2 | 0.000450214 |
Prunus persica | Pp05 | 1 | CH_ppe_184 | 3 | 4 | 0.000000133547 |
Populus trichocarpa | Chr12 | 1 | CH_ptr_501 | 2 | 2 | 0.000578001 |
Phaseolus vulgaris | Chr09 | 1 | CH_pvu_355 | 2 | 2 | 0.000220418 |
Quercus lobata | 10 | 1 | CH_qlo_257 | 4 | 9 | 0.00000000026006 |
Sechium edule | LG08 | 1 | CH_sed_255 | 2 | 2 | 0.000214026 |
Sequoiadendron giganteum | chr1 | 1 | CH_sgi_1005 | 3 | 6 | 0.000143926 |
Sequoiadendron giganteum | chr5 | 1 | CH_sgi_498 | 4 | 6 | 0.000000055239 |
Sequoiadendron giganteum | chr4 | 1 | CH_sgi_499 | 4 | 6 | 0.000000055239 |
Vigna mungo | CM024072.1 | 1 | CH_vmu_286 | 2 | 2 | 0.000193842 |
Vitis vinifera | chr17 | 1 | CH_vvi_129 | 4 | 18 | 0.0000000201821 |
Arabidopsis lyrata | scaffold_5 | 2 | CH_aly_230 | 2 | 2 | 0.0000660044 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.05 | 2 | CH_arhy_218 | 3 | 3 | 0.0000000752906 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 2 | CH_arhy_253 | 3 | 4 | 0.000000301141 |
Arabidopsis thaliana | Chr3 | 2 | CH_ath_220 | 2 | 2 | 0.0000286492 |
Brassica rapa | A01 | 2 | CH_bra_267 | 2 | 2 | 0.000257588 |
Corylus avellana | 4 | 2 | CH_cav_259 | 2 | 2 | 0.0000766695 |
Citrus clementina | scaffold_5 | 2 | CH_ccl_201 | 3 | 6 | 0.00000201819 |
Carpinus fangiana | Cfa08 | 2 | CH_cfa_90 | 3 | 4 | 0.0000000344144 |
Cardamine hirsuta | Chr5 | 2 | CH_chi_234 | 2 | 2 | 0.0000691204 |
Carya illinoinensis | Chr11 | 2 | CH_cil_58 | 5 | 5 | 6.64322e-16 |
Daucus carota | DCARv2_Chr7 | 2 | CH_dca_472 | 2 | 2 | 0.000956663 |
Eucalyptus grandis | Chr11 | 2 | CH_egr_92 | 6 | 7 | 1.08191e-19 |
Glycine max | Gm06 | 2 | CH_gma_136 | 3 | 3 | 0.0000000216099 |
Lotus japonicus | chr1 | 2 | CH_lja_268 | 2 | 2 | 0.0000715077 |
Lactuca sativa | Lsat_1_v8_lg_5 | 2 | CH_lsa_397 | 2 | 2 | 0.000154202 |
Malus domestica | Chr14 | 2 | CH_mdo_644 | 2 | 2 | 0.000379212 |
Punica granatum | NC_045134.1 | 2 | CH_pgr_325 | 2 | 2 | 0.000450214 |
Prunus persica | Pp05 | 2 | CH_ppe_184 | 3 | 4 | 0.000000133547 |
Populus trichocarpa | Chr12 | 2 | CH_ptr_501 | 2 | 2 | 0.000578001 |
Phaseolus vulgaris | Chr09 | 2 | CH_pvu_355 | 2 | 2 | 0.000220418 |
Quercus lobata | 10 | 2 | CH_qlo_257 | 4 | 9 | 0.00000000026006 |
Sechium edule | LG08 | 2 | CH_sed_255 | 2 | 2 | 0.000214026 |
Sequoiadendron giganteum | chr1 | 2 | CH_sgi_1005 | 3 | 6 | 0.000143926 |
Sequoiadendron giganteum | chr5 | 2 | CH_sgi_498 | 4 | 6 | 0.000000055239 |
Sequoiadendron giganteum | chr4 | 2 | CH_sgi_499 | 4 | 6 | 0.000000055239 |
Vigna mungo | CM024072.1 | 2 | CH_vmu_286 | 2 | 2 | 0.000193842 |
Vitis vinifera | chr17 | 2 | CH_vvi_129 | 4 | 18 | 0.0000000201821 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |