Functional clusters

Information

  • Type MapMan
  • Description External stimuli response.pathogen

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Eucalyptus grandis Chr05 1 CH_egr_70 23 78 1.56393e-22
Pisum sativum chr4LG4 1 CH_psa_31 10 29 0.000000000000666235
Populus trichocarpa scaffold_25 1 CH_ptr_528 5 14 0.000855463
Quercus lobata 4 1 CH_qlo_420 10 32 0.000000168411
Quercus lobata 11 1 CH_qlo_496 11 50 0.000000985558
Eucalyptus grandis Chr05 2 CH_egr_70 23 78 1.56393e-22
Pisum sativum chr4LG4 2 CH_psa_31 10 29 0.000000000000666235
Populus trichocarpa scaffold_25 2 CH_ptr_528 5 14 0.000855463
Quercus lobata 4 2 CH_qlo_420 10 32 0.000000168411
Quercus lobata 11 2 CH_qlo_496 11 50 0.000000985558

Available child term results

Ontology identifier Description Number of clusters
26.9.1 External stimuli response.pathogen.pattern-triggered immunity (PTI) network 2
26.9.1.1 External stimuli response.pathogen.pattern-triggered immunity (PTI) network.bacterial elicitor response 4
26.9.1.1.1.1 External stimuli response.pathogen.pattern-triggered immunity (PTI) network.bacterial elicitor response.FLS2-BAK1 flagellin receptor complex.flagellin receptor protein kinase component (FLS2) 24
26.9.1.1.1.2 External stimuli response.pathogen.pattern-triggered immunity (PTI) network.bacterial elicitor response.FLS2-BAK1 flagellin receptor complex.co-receptor kinase component (BAK1) 41
26.9.1.1.1.3 External stimuli response.pathogen.pattern-triggered immunity (PTI) network.bacterial elicitor response.FLS2-BAK1 flagellin receptor complex.dynamically associated protein kinase (BIK1) 2
26.9.1.2.1.2 External stimuli response.pathogen.pattern-triggered immunity (PTI) network.fungal elicitor response.CERK1-LYK5 chitin receptor complex.component CERK1 45
26.9.1.2.2 External stimuli response.pathogen.pattern-triggered immunity (PTI) network.fungal elicitor response.chitin receptor protein kinase (CEBiP) 12
26.9.1.3.1 External stimuli response.pathogen.pattern-triggered immunity (PTI) network.nematode elicitor response.receptor protein kinase (NILR) 16
26.9.2 External stimuli response.pathogen.effector-triggered immunity (ETI) network 19
26.9.2.1 External stimuli response.pathogen.effector-triggered immunity (ETI) network.TNL-mediated effector-triggered immunity 14
26.9.2.1.1 External stimuli response.pathogen.effector-triggered immunity (ETI) network.TNL-mediated effector-triggered immunity.effector receptor (NLR) 540
26.9.2.1.2 External stimuli response.pathogen.effector-triggered immunity (ETI) network.TNL-mediated effector-triggered immunity.regulatory protein (ADR) 28
26.9.2.1.3 External stimuli response.pathogen.effector-triggered immunity (ETI) network.TNL-mediated effector-triggered immunity.regulatory protein (NRG) 101
26.9.2.2.1 External stimuli response.pathogen.effector-triggered immunity (ETI) network.RIN4-RPM1 immune signalling.CC-NLR-type effector receptor (RPM1) 18
26.9.2.2.2 External stimuli response.pathogen.effector-triggered immunity (ETI) network.RIN4-RPM1 immune signalling.RPM1-interacting factor (RIN4) 8
26.9.2.2.4 External stimuli response.pathogen.effector-triggered immunity (ETI) network.RIN4-RPM1 immune signalling.RIN4-regulatory factor (GCN4) 12
26.9.2.3 External stimuli response.pathogen.effector-triggered immunity (ETI) network.regulatory protein (NDR1) 39
26.9.2.4 External stimuli response.pathogen.effector-triggered immunity (ETI) network.EDS1-PAD4/SAG101 signalling heterodimers 2
26.9.2.4.1 External stimuli response.pathogen.effector-triggered immunity (ETI) network.EDS1-PAD4/SAG101 signalling heterodimers.component EDS1 54
26.9.2.4.2 External stimuli response.pathogen.effector-triggered immunity (ETI) network.EDS1-PAD4/SAG101 signalling heterodimers.component PAD4 20
26.9.2.4.3 External stimuli response.pathogen.effector-triggered immunity (ETI) network.EDS1-PAD4/SAG101 signalling heterodimers.component SAG101 58
26.9.2.5 External stimuli response.pathogen.effector-triggered immunity (ETI) network.co-regulatory protein (RAR1) 4
26.9.2.6 External stimuli response.pathogen.effector-triggered immunity (ETI) network.immunity suppressor protein (SOBER/TIPSY) 24
26.9.3 External stimuli response.pathogen.defense mechanisms 6
26.9.3.1 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR) 2
26.9.3.1.1 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).regulatory protein (NPR1) 12
26.9.3.1.2 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).NPR1-interactive transcription factor (TGA) 2
26.9.3.1.4 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).regulatory protein (CBP60/SARD) 82
26.9.3.1.5.1 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).pipecolic acid metabolism.aminotransferase (ALD1) 2
26.9.3.1.5.2 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).pipecolic acid metabolism.cyclodeaminase (SARD4) 10
26.9.3.1.5.3 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).pipecolic acid metabolism.pipecolate N-hydroxylase (FMO1) 8
26.9.3.1.5.4 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).pipecolic acid metabolism.pipecolate oxidase (SOX) 25
26.9.3.2 External stimuli response.pathogen.defense mechanisms.defensin activities 2
26.9.3.2.1 External stimuli response.pathogen.defense mechanisms.defensin activities.defensin (PDF1) 59
26.9.3.2.2 External stimuli response.pathogen.defense mechanisms.defensin activities.defensin (PDF2) 108
26.9.3.2.3 External stimuli response.pathogen.defense mechanisms.defensin activities.defensin (PDF3) 87
26.9.3.3.1 External stimuli response.pathogen.defense mechanisms.WRKY33-dependent plant immunity.transcription factor (WRKY33) 2
26.9.3.3.2 External stimuli response.pathogen.defense mechanisms.WRKY33-dependent plant immunity.WRKY33-activating protein (SIB) 18
26.9.3.4 External stimuli response.pathogen.defense mechanisms.pathogen polygalacturonase inhibitor (PGIP) 143

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001