Functional clusters

Information

  • Type MapMan
  • Description External stimuli response.symbiont.symbiosis signalling pathway

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Nelumbo nucifera chr1 1 CH_nnu_311 3 9 0.000130137
Rosa chinensis RcHm_v2.0_Chr4 1 CH_rch_231 4 5 0.0000000225632
Salix brachista GWHAAZH00000008 1 CH_sbr_205 3 3 0.0000462807
Nelumbo nucifera chr1 2 CH_nnu_311 3 9 0.000130137
Rosa chinensis RcHm_v2.0_Chr4 2 CH_rch_231 4 5 0.0000000225632
Salix brachista GWHAAZH00000008 2 CH_sbr_205 3 3 0.0000462807

Available child term results

Ontology identifier Description Number of clusters
26.10.1.1 External stimuli response.symbiont.symbiosis signalling pathway.LysM receptor kinase (NFR1/LYK3) 20
26.10.1.10 External stimuli response.symbiont.symbiosis signalling pathway.symbiosis factor (VAPYRIN) 1
26.10.1.11 External stimuli response.symbiont.symbiosis signalling pathway.infection-specific kinase (RINRK) 4
26.10.1.2 External stimuli response.symbiont.symbiosis signalling pathway.LysM receptor kinase (NFR5/NFP) 2
26.10.1.4 External stimuli response.symbiont.symbiosis signalling pathway.calcium cation channel (DMI1/Pollux/Castor) 2
26.10.1.5.1 External stimuli response.symbiont.symbiosis signalling pathway.CCaMK-IPD3 kinase complex.component CCaMK 4
26.10.1.5.2 External stimuli response.symbiont.symbiosis signalling pathway.CCaMK-IPD3 kinase complex.component IPD3/CYCLOPS 10
26.10.1.6.1 External stimuli response.symbiont.symbiosis signalling pathway.NSP1-NSP2 nodulation initiation complex.component NSP1 6
26.10.1.6.2 External stimuli response.symbiont.symbiosis signalling pathway.NSP1-NSP2 nodulation initiation complex.component NSP2 10
26.10.1.8 External stimuli response.symbiont.symbiosis signalling pathway.transcription factor (NIN) 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001