Functional clusters

Information

  • Type MapMan
  • Description External stimuli response.pathogen.effector-triggered immunity (ETI) network.RIN4-RPM1 immune signalling.RIN4-regulatory factor (GCN4)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_5 1 CH_aly_313 2 2 0.000198013
Corylus avellana 2 1 CH_cav_258 2 2 0.0000766695
Carpinus fangiana Cfa01 1 CH_cfa_335 2 4 0.000454373
Eutrema salsugineum scaffold_16 1 CH_esa_172 2 2 0.0000761499
Quercus lobata 6 1 CH_qlo_762 2 3 0.000154883
Vanilla planifolia CM028157.1 1 CH_vpl_242 2 3 0.000221656
Arabidopsis lyrata scaffold_5 2 CH_aly_313 2 2 0.000198013
Corylus avellana 2 2 CH_cav_258 2 2 0.0000766695
Carpinus fangiana Cfa01 2 CH_cfa_335 2 4 0.000454373
Eutrema salsugineum scaffold_16 2 CH_esa_172 2 2 0.0000761499
Quercus lobata 6 2 CH_qlo_762 2 3 0.000154883
Vanilla planifolia CM028157.1 2 CH_vpl_242 2 3 0.000221656

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001