Functional clusters
Information
- Type MapMan
- Description External stimuli response.pathogen.effector-triggered immunity (ETI) network.regulatory protein (NDR1)
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Aethionema arabicum | LG-8 | 1 | CH_aar_165 | 2 | 2 | 0.0000912326 |
Arabidopsis lyrata | scaffold_3 | 1 | CH_aly_77 | 3 | 3 | 0.00000000653509 |
Arabidopsis thaliana | Chr3 | 1 | CH_ath_94 | 3 | 5 | 0.0000000123115 |
Amborella trichopoda | AmTr_v1.0_scaffold00037 | 1 | CH_atr_323 | 2 | 5 | 0.000794313 |
Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 1 | CH_bvu_193 | 2 | 2 | 0.0000827917 |
Corylus avellana | 4 | 1 | CH_cav_276 | 2 | 2 | 0.0000766695 |
Carpinus fangiana | Cfa08 | 1 | CH_cfa_241 | 2 | 2 | 0.0000757346 |
Carya illinoinensis | Chr11 | 1 | CH_cil_406 | 2 | 3 | 0.000185943 |
Chenopodium quinoa | C_Quinoa_Scaffold_1529 | 1 | CH_cqu_586 | 2 | 4 | 0.000852811 |
Capsella rubella | scaffold_3 | 1 | CH_cru_277 | 2 | 2 | 0.0000731154 |
Durio zibethinus | NW_019167993.1 | 1 | CH_dzi_235 | 2 | 2 | 0.000139047 |
Eutrema salsugineum | scaffold_13 | 1 | CH_esa_188 | 2 | 2 | 0.0000761499 |
Magnolia biondii | Chr18 | 1 | CH_mbi_69 | 4 | 5 | 0.00000000000859158 |
Malus domestica | Chr03 | 1 | CH_mdo_166 | 3 | 3 | 0.00000000862825 |
Nelumbo nucifera | chr1 | 1 | CH_nnu_390 | 2 | 3 | 0.000392399 |
Olea europaea | chr6 | 1 | CH_oeu_321 | 2 | 2 | 0.000320273 |
Sechium edule | LG07 | 1 | CH_sed_211 | 2 | 2 | 0.0000713419 |
Schrenkiella parvula | ch3-1 | 1 | CH_spa_88 | 3 | 5 | 0.0000000929819 |
Trochodendron aralioides | group3 | 1 | CH_tar_102 | 3 | 3 | 0.000000021627 |
Aethionema arabicum | LG-8 | 2 | CH_aar_165 | 2 | 2 | 0.0000912326 |
Arabidopsis lyrata | scaffold_3 | 2 | CH_aly_77 | 3 | 3 | 0.00000000653509 |
Arabidopsis thaliana | Chr3 | 2 | CH_ath_94 | 3 | 5 | 0.0000000123115 |
Amborella trichopoda | AmTr_v1.0_scaffold00037 | 2 | CH_atr_323 | 2 | 5 | 0.000794313 |
Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 2 | CH_bvu_193 | 2 | 2 | 0.0000827917 |
Corylus avellana | 4 | 2 | CH_cav_276 | 2 | 2 | 0.0000766695 |
Carpinus fangiana | Cfa08 | 2 | CH_cfa_241 | 2 | 2 | 0.0000757346 |
Carya illinoinensis | Chr11 | 2 | CH_cil_406 | 2 | 3 | 0.000185943 |
Chenopodium quinoa | C_Quinoa_Scaffold_1529 | 2 | CH_cqu_586 | 2 | 4 | 0.000852811 |
Capsella rubella | scaffold_3 | 2 | CH_cru_277 | 2 | 2 | 0.0000731154 |
Durio zibethinus | NW_019167993.1 | 2 | CH_dzi_235 | 2 | 2 | 0.000139047 |
Eucalyptus grandis | Chr06 | 2 | CH_egr_759 | 2 | 3 | 0.000175577 |
Eutrema salsugineum | scaffold_13 | 2 | CH_esa_188 | 2 | 2 | 0.0000761499 |
Magnolia biondii | Chr18 | 2 | CH_mbi_69 | 4 | 5 | 0.00000000000859158 |
Malus domestica | Chr03 | 2 | CH_mdo_166 | 3 | 3 | 0.00000000862825 |
Nelumbo nucifera | chr1 | 2 | CH_nnu_390 | 2 | 3 | 0.000392399 |
Olea europaea | chr6 | 2 | CH_oeu_321 | 2 | 2 | 0.000320273 |
Sechium edule | LG07 | 2 | CH_sed_211 | 2 | 2 | 0.0000713419 |
Schrenkiella parvula | ch3-1 | 2 | CH_spa_88 | 3 | 5 | 0.0000000929819 |
Trochodendron aralioides | group3 | 2 | CH_tar_102 | 3 | 3 | 0.000000021627 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |