Functional clusters

Information

  • Type MapMan
  • Description External stimuli response.pathogen.effector-triggered immunity (ETI) network

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Erigeron canadensis Conyza_canadensis_scaffold:5 1 CH_eca_194 6 20 0.00000149892
Malus domestica Chr17 1 CH_mdo_345 7 37 0.0000125013
Manihot esculenta Chromosome18 1 CH_mes_50 11 58 0.0000000000000106347
Medicago truncatula chr4 1 CH_mtr_404 10 79 0.00000397163
Populus trichocarpa Chr19 1 CH_ptr_27 16 64 4.34404e-20
Quercus lobata 9 1 CH_qlo_154 16 60 0.000000000000106601
Quercus lobata 9 1 CH_qlo_159 17 76 0.000000000000230552
Quercus lobata 9 1 CH_qlo_183 16 69 0.0000000000012494
Quercus lobata 3 1 CH_qlo_537 8 23 0.00000299765
Sechium edule LG09 1 CH_sed_107 5 21 0.000000663249
Erigeron canadensis Conyza_canadensis_scaffold:5 2 CH_eca_194 6 20 0.00000149892
Malus domestica Chr17 2 CH_mdo_345 7 37 0.0000125013
Manihot esculenta Chromosome18 2 CH_mes_50 11 58 0.0000000000000106347
Populus trichocarpa Chr19 2 CH_ptr_27 16 64 4.34404e-20
Quercus lobata 9 2 CH_qlo_154 16 60 0.000000000000106601
Quercus lobata 9 2 CH_qlo_159 17 76 0.000000000000230552
Quercus lobata 9 2 CH_qlo_183 16 69 0.0000000000012494
Quercus lobata 3 2 CH_qlo_537 8 23 0.00000299765
Sechium edule LG09 2 CH_sed_107 5 21 0.000000663249

Available child term results

Ontology identifier Description Number of clusters
26.9.2.1 External stimuli response.pathogen.effector-triggered immunity (ETI) network.TNL-mediated effector-triggered immunity 14
26.9.2.1.1 External stimuli response.pathogen.effector-triggered immunity (ETI) network.TNL-mediated effector-triggered immunity.effector receptor (NLR) 540
26.9.2.1.2 External stimuli response.pathogen.effector-triggered immunity (ETI) network.TNL-mediated effector-triggered immunity.regulatory protein (ADR) 28
26.9.2.1.3 External stimuli response.pathogen.effector-triggered immunity (ETI) network.TNL-mediated effector-triggered immunity.regulatory protein (NRG) 101
26.9.2.2.1 External stimuli response.pathogen.effector-triggered immunity (ETI) network.RIN4-RPM1 immune signalling.CC-NLR-type effector receptor (RPM1) 18
26.9.2.2.2 External stimuli response.pathogen.effector-triggered immunity (ETI) network.RIN4-RPM1 immune signalling.RPM1-interacting factor (RIN4) 8
26.9.2.2.4 External stimuli response.pathogen.effector-triggered immunity (ETI) network.RIN4-RPM1 immune signalling.RIN4-regulatory factor (GCN4) 12
26.9.2.3 External stimuli response.pathogen.effector-triggered immunity (ETI) network.regulatory protein (NDR1) 39
26.9.2.4 External stimuli response.pathogen.effector-triggered immunity (ETI) network.EDS1-PAD4/SAG101 signalling heterodimers 2
26.9.2.4.1 External stimuli response.pathogen.effector-triggered immunity (ETI) network.EDS1-PAD4/SAG101 signalling heterodimers.component EDS1 54
26.9.2.4.2 External stimuli response.pathogen.effector-triggered immunity (ETI) network.EDS1-PAD4/SAG101 signalling heterodimers.component PAD4 20
26.9.2.4.3 External stimuli response.pathogen.effector-triggered immunity (ETI) network.EDS1-PAD4/SAG101 signalling heterodimers.component SAG101 58
26.9.2.5 External stimuli response.pathogen.effector-triggered immunity (ETI) network.co-regulatory protein (RAR1) 4
26.9.2.6 External stimuli response.pathogen.effector-triggered immunity (ETI) network.immunity suppressor protein (SOBER/TIPSY) 24

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001