Functional clusters

Information

  • Type MapMan
  • Description External stimuli response.toxic compounds.arsenic.vacuolar sequestration.glutathione S-conjugate transporter

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr10 1 CH_acertr_38 5 16 0.0000000000169781
Arabidopsis lyrata scaffold_1 1 CH_aly_312 2 2 0.000198013
Arabidopsis thaliana Chr1 1 CH_ath_102 3 4 0.0000000196984
Brassica oleracea C5 1 CH_bol_440 2 3 0.000980536
Camellia sinensis var. sinensis Chr8 1 CH_camsi_150 4 16 0.000000000526327
Cannabis sativa NC_044378.1 1 CH_cansat_62 4 7 0.0000000000297286
Cicer arietinum L. Ca_LG4_v3 1 CH_car_293 2 3 0.000700425
Citrus clementina scaffold_2 1 CH_ccl_306 2 2 0.0000820311
Cardamine hirsuta Chr1 1 CH_chi_105 3 3 0.0000000286668
Carica papaya supercontig_17 1 CH_cpa_275 2 3 0.000285185
Capsella rubella scaffold_1 1 CH_cru_324 2 2 0.000219346
Cucumis sativus L. chr6 1 CH_csa_265 2 2 0.000250428
Daucus carota DCARv2_Chr2 1 CH_dca_405 2 3 0.000573967
Davidia involucrata GWHABJS00000020 1 CH_din_339 2 2 0.000150038
Durio zibethinus NW_019167915.1 1 CH_dzi_371 2 4 0.000834215
Erythranthe guttata scaffold_13 1 CH_egut_301 2 2 0.0000728147
Eutrema salsugineum scaffold_5 1 CH_esa_71 3 3 0.0000000347941
Fragaria vesca Fvb3 1 CH_fve_399 2 2 0.000353461
Fragaria vesca Fvb2 1 CH_fve_400 2 2 0.000353461
Gossypium hirsutum A12 1 CH_ghi_111 4 5 0.000000000019989
Gossypium hirsutum D12 1 CH_ghi_112 4 5 0.000000000019989
Gossypium raimondii Chr08 1 CH_gra_47 4 4 0.000000000000462285
Lonicera japonica GWHAAZE00000001 1 CH_lonja_467 2 2 0.000179662
Malus domestica Chr10 1 CH_mdo_612 2 3 0.00034128
Manihot esculenta Chromosome06 1 CH_mes_291 2 2 0.0000610631
Olea europaea chr16 1 CH_oeu_238 2 2 0.000160137
Prunus persica Pp04 1 CH_ppe_338 2 2 0.0000745962
Populus trichocarpa Chr04 1 CH_ptr_439 2 2 0.000346801
Quercus lobata 5 1 CH_qlo_354 3 4 0.0000000159933
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_211 3 4 0.00000000953543
Salvia bowleyana GWHASIU00000004 1 CH_sbo_285 2 2 0.000045498
Schrenkiella parvula ch1-1 1 CH_spa_223 2 2 0.000236202
Theobroma cacao Chromosome_2 1 CH_tca_286 2 2 0.0000732386
Tarenaya hassleriana NW_010969548.1 1 CH_tha_105 2 2 0.000069847
Tripterygium wilfordii NC_052245.1 1 CH_twi_174 2 2 0.0000557507
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_243 2 2 0.0000929238
Acer truncatum chr10 2 CH_acertr_38 5 16 0.0000000000169781
Arabidopsis lyrata scaffold_1 2 CH_aly_312 2 2 0.000198013
Arabidopsis thaliana Chr1 2 CH_ath_102 3 4 0.0000000196984
Brassica oleracea C5 2 CH_bol_440 2 3 0.000980536
Camellia sinensis var. sinensis Chr8 2 CH_camsi_150 4 16 0.000000000526327
Cannabis sativa NC_044378.1 2 CH_cansat_62 4 7 0.0000000000297286
Cicer arietinum L. Ca_LG4_v3 2 CH_car_293 2 3 0.000700425
Citrus clementina scaffold_2 2 CH_ccl_306 2 2 0.0000820311
Cardamine hirsuta Chr1 2 CH_chi_105 3 3 0.0000000286668
Carica papaya supercontig_17 2 CH_cpa_275 2 3 0.000285185
Capsella rubella scaffold_1 2 CH_cru_324 2 2 0.000219346
Cucumis sativus L. chr6 2 CH_csa_265 2 2 0.000250428
Daucus carota DCARv2_Chr2 2 CH_dca_405 2 3 0.000573967
Davidia involucrata GWHABJS00000020 2 CH_din_339 2 2 0.000150038
Durio zibethinus NW_019167915.1 2 CH_dzi_371 2 4 0.000834215
Erythranthe guttata scaffold_13 2 CH_egut_301 2 2 0.0000728147
Eutrema salsugineum scaffold_5 2 CH_esa_71 3 3 0.0000000347941
Fragaria vesca Fvb3 2 CH_fve_399 2 2 0.000353461
Fragaria vesca Fvb2 2 CH_fve_400 2 2 0.000353461
Gossypium hirsutum A12 2 CH_ghi_111 4 5 0.000000000019989
Gossypium hirsutum D12 2 CH_ghi_112 4 5 0.000000000019989
Gossypium raimondii Chr08 2 CH_gra_47 4 4 0.000000000000462285
Lonicera japonica GWHAAZE00000001 2 CH_lonja_467 2 2 0.000179662
Malus domestica Chr10 2 CH_mdo_612 2 3 0.00034128
Manihot esculenta Chromosome06 2 CH_mes_291 2 2 0.0000610631
Olea europaea chr16 2 CH_oeu_238 2 2 0.000160137
Prunus persica Pp04 2 CH_ppe_338 2 2 0.0000745962
Populus trichocarpa Chr04 2 CH_ptr_439 2 2 0.000346801
Quercus lobata 5 2 CH_qlo_354 3 4 0.0000000159933
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_211 3 4 0.00000000953543
Salvia bowleyana GWHASIU00000004 2 CH_sbo_285 2 2 0.000045498
Schrenkiella parvula ch1-1 2 CH_spa_223 2 2 0.000236202
Theobroma cacao Chromosome_2 2 CH_tca_286 2 2 0.0000732386
Tarenaya hassleriana NW_010969548.1 2 CH_tha_105 2 2 0.000069847
Tripterygium wilfordii NC_052245.1 2 CH_twi_174 2 2 0.0000557507
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_243 2 2 0.0000929238

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001