Functional clusters

Information

  • Type MapMan
  • Description External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).pipecolic acid metabolism.pipecolate oxidase (SOX)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group23 1 CH_ach_119 2 2 0.000162964
Brassica carinata ChrC02 1 CH_bca_619 2 2 0.0000641293
Cicer arietinum L. Ca_LG5_v3 1 CH_car_13 4 10 0.000000000296984
Carpinus fangiana Cfa05 1 CH_cfa_39 4 5 0.0000000000065164
Gossypium raimondii Chr10 1 CH_gra_280 2 3 0.000160828
Helianthus annuus HanXRQChr10 1 CH_han_497 2 2 0.000115929
Medicago truncatula chr3 1 CH_mtr_579 2 3 0.000123256
Prunus persica Pp01 1 CH_ppe_166 3 4 0.0000000333876
Quercus lobata 12 1 CH_qlo_646 2 2 0.0000516289
Trochodendron aralioides group10 1 CH_tar_332 2 2 0.00018011
Trifolium pratense Tp57577_TGAC_v2_LG7 1 CH_tpr_97 3 6 0.00000017189
Utricularia gibba unitig_32 1 CH_ugi_21 3 3 0.0000000323787
Actinidia chinensis Lachesis_group23 2 CH_ach_119 2 2 0.000162964
Brassica carinata ChrC02 2 CH_bca_619 2 2 0.0000641293
Cicer arietinum L. Ca_LG5_v3 2 CH_car_13 4 10 0.000000000296984
Carpinus fangiana Cfa05 2 CH_cfa_39 4 5 0.0000000000065164
Eucalyptus grandis Chr03 2 CH_egr_343 3 3 0.00000000513834
Gossypium hirsutum D06 2 CH_ghi_746 2 4 0.000480607
Gossypium raimondii Chr10 2 CH_gra_280 2 3 0.000160828
Helianthus annuus HanXRQChr10 2 CH_han_497 2 2 0.000115929
Prunus persica Pp01 2 CH_ppe_166 3 4 0.0000000333876
Quercus lobata 12 2 CH_qlo_646 2 2 0.0000516289
Trochodendron aralioides group10 2 CH_tar_332 2 2 0.00018011
Trifolium pratense Tp57577_TGAC_v2_LG7 2 CH_tpr_97 3 6 0.00000017189
Utricularia gibba unitig_32 2 CH_ugi_21 3 3 0.0000000323787

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001