Functional clusters

Information

  • Type MapMan
  • Description External stimuli response.toxic compounds.arsenic.glutathione-mediated detoxification.class lambda glutathione S-transferase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_6 1 CH_aly_311 2 2 0.000198013
Aquilegia oxysepala CHR02 1 CH_aox_117 3 9 0.0000161963
Aquilegia oxysepala CHR05 1 CH_aox_200 3 18 0.000157151
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 1 CH_arhy_744 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 1 CH_arhy_745 2 2 0.000838273
Arabidopsis thaliana Chr5 1 CH_ath_271 2 2 0.0000859476
Amborella trichopoda AmTr_v1.0_scaffold00023 1 CH_atr_65 3 3 0.00000000946662
Brassica napus C02 1 CH_bna_511 2 2 0.000111309
Brassica oleracea C2 1 CH_bol_10 6 6 5.8772e-21
Cicer arietinum L. Ca_LG3_v3 1 CH_car_272 2 2 0.000466981
Coffea canephora chr9 1 CH_ccan_36 4 28 0.0000000000203647
Citrus clementina scaffold_6 1 CH_ccl_168 3 3 0.000000565268
Ceratophyllum demersum 6 1 CH_cde_178 2 2 0.000236939
Carya illinoinensis Chr09 1 CH_cil_120 4 4 0.000000000025006
Cucumis melo chr04 1 CH_cme_94 3 4 0.000000106806
Carica papaya supercontig_114 1 CH_cpa_51 3 3 0.0000000542279
Capsella rubella scaffold_6 1 CH_cru_323 2 2 0.000219346
Cucumis sativus L. chr3 1 CH_csa_114 3 4 0.000000167232
Eucalyptus grandis Chr01 1 CH_egr_106 6 6 1.29834e-18
Erythranthe guttata scaffold_10 1 CH_egut_364 2 2 0.000218444
Fragaria x ananassa Fvb7-4 1 CH_fan_182 4 37 0.000000619964
Fragaria vesca Fvb7 1 CH_fve_430 2 3 0.000530165
Glycine max Gm13 1 CH_gma_559 2 2 0.000569336
Lonicera japonica GWHAAZE00000001 1 CH_lonja_419 3 14 0.000109493
Magnolia biondii Chr14 1 CH_mbi_419 2 3 0.000145695
Malus domestica Chr04 1 CH_mdo_50 5 8 0.0000000000000182381
Manihot esculenta Chromosome09 1 CH_mes_461 2 2 0.000610631
Medicago truncatula chr1 1 CH_mtr_250 3 3 0.0000000253218
Oryza sativa ssp. japonica chr03 1 CH_osa_65 3 3 0.00000000418381
Punica granatum NC_045128.1 1 CH_pgr_324 2 2 0.000450214
Pisum sativum chr6LG2 1 CH_psa_333 2 2 0.000312981
Papaver somniferum NC_039368.1 1 CH_pso_219 3 4 0.0000000608743
Papaver somniferum NC_039366.1 1 CH_pso_310 3 9 0.00000127813
Phaseolus vulgaris Chr07 1 CH_pvu_413 2 2 0.000440836
Quercus lobata 5 1 CH_qlo_286 4 4 0.00000000126344
Quercus lobata 7 1 CH_qlo_44 8 9 1.21335e-22
Quercus lobata 8 1 CH_qlo_586 3 4 0.0000130467
Rosa chinensis RcHm_v2.0_Chr3 1 CH_rch_663 2 2 0.000239192
Rhododendron simsii chr03 1 CH_rsi_303 3 10 0.0000262117
Salvia bowleyana GWHASIU00000006 1 CH_sbo_339 2 2 0.000136494
Sechium edule LG02 1 CH_sed_83 3 3 0.000000152696
Sequoiadendron giganteum chr7 1 CH_sgi_1275 2 3 0.000438418
Solanum lycopersicum SL4.0ch12 1 CH_sly_548 2 2 0.000880411
Schrenkiella parvula ch6-6 1 CH_spa_222 2 2 0.000236202
Solanum pennellii Spenn-ch12 1 CH_spe_72 4 5 0.000000000277172
Solanum tuberosum ST4.03ch09 1 CH_stu_515 2 2 0.000307472
Tarenaya hassleriana NW_010965775.1 1 CH_tha_142 2 2 0.000209541
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_370 2 2 0.000557543
Vigna mungo CM024070.1 1 CH_vmu_342 2 2 0.000387685
Zea mays 1 1 CH_zma_70 3 3 0.0000000784342
Arabidopsis lyrata scaffold_6 2 CH_aly_311 2 2 0.000198013
Aquilegia oxysepala CHR02 2 CH_aox_117 3 9 0.0000161963
Aquilegia oxysepala CHR05 2 CH_aox_200 3 18 0.000157151
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 2 CH_arhy_744 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 2 CH_arhy_745 2 2 0.000838273
Arabidopsis thaliana Chr5 2 CH_ath_271 2 2 0.0000859476
Amborella trichopoda AmTr_v1.0_scaffold00023 2 CH_atr_65 3 3 0.00000000946662
Brassica oleracea C2 2 CH_bol_10 6 6 5.8772e-21
Cicer arietinum L. Ca_LG3_v3 2 CH_car_272 2 2 0.000466981
Coffea canephora chr9 2 CH_ccan_36 4 28 0.0000000000203647
Citrus clementina scaffold_6 2 CH_ccl_168 3 3 0.000000565268
Ceratophyllum demersum 6 2 CH_cde_178 2 2 0.000236939
Carya illinoinensis Chr09 2 CH_cil_120 4 4 0.000000000025006
Cucumis melo chr04 2 CH_cme_94 3 4 0.000000106806
Carica papaya supercontig_114 2 CH_cpa_51 3 3 0.0000000542279
Capsella rubella scaffold_6 2 CH_cru_323 2 2 0.000219346
Cucumis sativus L. chr3 2 CH_csa_114 3 4 0.000000167232
Eucalyptus grandis Chr01 2 CH_egr_106 6 6 1.29834e-18
Erythranthe guttata scaffold_10 2 CH_egut_364 2 2 0.000218444
Fragaria x ananassa Fvb7-4 2 CH_fan_182 4 37 0.000000619964
Fragaria vesca Fvb7 2 CH_fve_430 2 3 0.000530165
Gossypium hirsutum A01 2 CH_ghi_778 2 2 0.000560733
Glycine max Gm13 2 CH_gma_559 2 2 0.000569336
Lotus japonicus chr1 2 CH_lja_369 2 2 0.000429046
Lonicera japonica GWHAAZE00000001 2 CH_lonja_419 3 14 0.000109493
Magnolia biondii Chr14 2 CH_mbi_419 2 3 0.000145695
Malus domestica Chr04 2 CH_mdo_50 5 8 0.0000000000000182381
Manihot esculenta Chromosome09 2 CH_mes_461 2 2 0.000610631
Oryza sativa ssp. japonica chr03 2 CH_osa_65 3 3 0.00000000418381
Punica granatum NC_045128.1 2 CH_pgr_324 2 2 0.000450214
Pisum sativum chr6LG2 2 CH_psa_333 2 2 0.000312981
Papaver somniferum NC_039368.1 2 CH_pso_219 3 4 0.0000000608743
Papaver somniferum NC_039366.1 2 CH_pso_310 3 9 0.00000127813
Phaseolus vulgaris Chr07 2 CH_pvu_413 2 2 0.000440836
Quercus lobata 5 2 CH_qlo_286 4 4 0.00000000126344
Quercus lobata 7 2 CH_qlo_44 8 9 1.21335e-22
Quercus lobata 8 2 CH_qlo_586 3 4 0.0000130467
Rosa chinensis RcHm_v2.0_Chr3 2 CH_rch_663 2 2 0.000239192
Rhododendron simsii chr03 2 CH_rsi_303 3 10 0.0000262117
Salvia bowleyana GWHASIU00000006 2 CH_sbo_339 2 2 0.000136494
Sechium edule LG02 2 CH_sed_83 3 3 0.000000152696
Sequoiadendron giganteum chr7 2 CH_sgi_1275 2 3 0.000438418
Solanum lycopersicum SL4.0ch12 2 CH_sly_548 2 2 0.000880411
Schrenkiella parvula ch6-6 2 CH_spa_222 2 2 0.000236202
Solanum pennellii Spenn-ch12 2 CH_spe_72 4 5 0.000000000277172
Solanum tuberosum ST4.03ch09 2 CH_stu_515 2 2 0.000307472
Tarenaya hassleriana NW_010965775.1 2 CH_tha_142 2 2 0.000209541
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_370 2 2 0.000557543
Vigna mungo CM024070.1 2 CH_vmu_342 2 2 0.000387685
Zea mays 1 2 CH_zma_70 3 3 0.0000000784342

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001