Functional clusters
Information
- Type MapMan
- Description External stimuli response.temperature.cold response.ICE-CBF cold acclimation transcriptional cascade.transcription factor (CBF/DREB1)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_7 | 1 | CH_aly_115 | 3 | 4 | 0.000000104555 |
| Arabidopsis thaliana | Chr4 | 1 | CH_ath_142 | 3 | 7 | 0.000000172348 |
| Brassica carinata | ChrB03 | 1 | CH_bca_258 | 3 | 4 | 0.00000015353 |
| Brassica napus | A08 | 1 | CH_bna_242 | 3 | 5 | 0.000000433599 |
| Brassica rapa | A08 | 1 | CH_bra_94 | 3 | 4 | 0.000000221161 |
| Cannabis sativa | NC_044371.1 | 1 | CH_cansat_179 | 3 | 13 | 0.000018483 |
| Carpinus fangiana | Cfa05 | 1 | CH_cfa_42 | 4 | 4 | 0.00000000000651664 |
| Capsella rubella | scaffold_7 | 1 | CH_cru_112 | 3 | 3 | 0.0000000320764 |
| Daucus carota | DCARv2_Chr3 | 1 | CH_dca_14 | 6 | 8 | 6.14214e-16 |
| Daucus carota | DCARv2_Chr5 | 1 | CH_dca_176 | 3 | 4 | 0.00000536804 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 1 | CH_eca_4 | 8 | 10 | 2.33738e-25 |
| Eucalyptus grandis | Chr01 | 1 | CH_egr_14 | 11 | 15 | 2.5125e-35 |
| Erythranthe guttata | scaffold_6 | 1 | CH_egut_40 | 5 | 5 | 0.0000000000000118092 |
| Helianthus annuus | HanXRQChr02 | 1 | CH_han_292 | 3 | 3 | 0.00000101918 |
| Hydrangea macrophylla | Hma1.2p1_0099F.1 | 1 | CH_hma_60 | 3 | 3 | 0.000000185113 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 1 | CH_lsa_13 | 8 | 16 | 6.33959e-22 |
| Magnolia biondii | Chr04 | 1 | CH_mbi_60 | 6 | 48 | 0.00000000000206487 |
| Manihot esculenta | Chromosome01 | 1 | CH_mes_416 | 2 | 2 | 0.000366379 |
| Medicago truncatula | chr6 | 1 | CH_mtr_22 | 9 | 29 | 1.15256e-24 |
| Petunia axillaris | Peaxi162Scf00648 | 1 | CH_pax_20 | 5 | 8 | 0.0000000000000617453 |
| Pisum sativum | chr1LG6 | 1 | CH_psa_64 | 4 | 10 | 0.00000000312832 |
| Quercus lobata | 8 | 1 | CH_qlo_203 | 5 | 7 | 0.00000000000488623 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 1 | CH_rch_87 | 5 | 14 | 0.000000000000227491 |
| Rhododendron simsii | chr03 | 1 | CH_rsi_342 | 2 | 2 | 0.0000645307 |
| Solanum lycopersicum | SL4.0ch03 | 1 | CH_sly_127 | 3 | 3 | 0.00000000516764 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_84 | 3 | 3 | 0.0000000129529 |
| Arabidopsis lyrata | scaffold_7 | 2 | CH_aly_115 | 3 | 4 | 0.000000104555 |
| Arabidopsis thaliana | Chr4 | 2 | CH_ath_142 | 3 | 7 | 0.000000172348 |
| Brassica carinata | ChrB03 | 2 | CH_bca_258 | 3 | 4 | 0.00000015353 |
| Brassica rapa | A08 | 2 | CH_bra_94 | 3 | 4 | 0.000000221161 |
| Cannabis sativa | NC_044371.1 | 2 | CH_cansat_179 | 3 | 13 | 0.000018483 |
| Carpinus fangiana | Cfa05 | 2 | CH_cfa_42 | 4 | 4 | 0.00000000000651664 |
| Capsella rubella | scaffold_7 | 2 | CH_cru_112 | 3 | 3 | 0.0000000320764 |
| Daucus carota | DCARv2_Chr3 | 2 | CH_dca_14 | 6 | 8 | 6.14214e-16 |
| Daucus carota | DCARv2_Chr5 | 2 | CH_dca_176 | 3 | 4 | 0.00000536804 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 2 | CH_eca_4 | 8 | 10 | 2.33738e-25 |
| Eucalyptus grandis | Chr01 | 2 | CH_egr_14 | 11 | 15 | 2.5125e-35 |
| Erythranthe guttata | scaffold_6 | 2 | CH_egut_40 | 5 | 5 | 0.0000000000000118092 |
| Helianthus annuus | HanXRQChr02 | 2 | CH_han_292 | 3 | 3 | 0.00000101918 |
| Hydrangea macrophylla | Hma1.2p1_0099F.1 | 2 | CH_hma_60 | 3 | 3 | 0.000000185113 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 2 | CH_lsa_13 | 8 | 16 | 6.33959e-22 |
| Magnolia biondii | Chr04 | 2 | CH_mbi_60 | 6 | 48 | 0.00000000000206487 |
| Manihot esculenta | Chromosome01 | 2 | CH_mes_416 | 2 | 2 | 0.000366379 |
| Petunia axillaris | Peaxi162Scf00648 | 2 | CH_pax_20 | 5 | 8 | 0.0000000000000617453 |
| Pisum sativum | chr1LG6 | 2 | CH_psa_64 | 4 | 10 | 0.00000000312832 |
| Quercus lobata | 8 | 2 | CH_qlo_203 | 5 | 7 | 0.00000000000488623 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 2 | CH_rch_87 | 5 | 14 | 0.000000000000227491 |
| Rhododendron simsii | chr03 | 2 | CH_rsi_342 | 2 | 2 | 0.0000645307 |
| Solanum lycopersicum | SL4.0ch03 | 2 | CH_sly_127 | 3 | 3 | 0.00000000516764 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_84 | 3 | 3 | 0.0000000129529 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |