Functional clusters

Information

  • Type Gene Ontology
  • Description primary metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr2 3 CH_ath_670 30 58 0.000627209
Magnolia biondii Chr04 3 CH_mbi_446 30 52 0.0000561042
Magnolia biondii Chr19 3 CH_mbi_464 22 32 0.0000807813
Sorghum bicolor Chr06 3 CH_sbi_438 30 46 0.000705383
Saccharum spontaneum Chr6A 3 CH_ssp_724 29 38 0.000145647
Triticum aestivum Chr3A 3 CH_tae_1234 17 18 0.000304572
Arabidopsis thaliana Chr2 4 CH_ath_670 30 58 0.000627209
Magnolia biondii Chr04 4 CH_mbi_446 30 52 0.0000561042
Magnolia biondii Chr19 4 CH_mbi_464 22 32 0.0000807813
Sorghum bicolor Chr06 4 CH_sbi_438 30 46 0.000705383
Saccharum spontaneum Chr6A 4 CH_ssp_724 29 38 0.000145647
Triticum aestivum Chr3A 4 CH_tae_1234 17 18 0.000304572

Available child term results

Ontology identifier Description Number of clusters
GO:0000245 spliceosomal complex assembly 28
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 2
GO:0000292 RNA fragment catabolic process 2
GO:0000413 protein peptidyl-prolyl isomerization 26
GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 12
GO:0001188 RNA polymerase I preinitiation complex assembly 10
GO:0005975 carbohydrate metabolic process 44
GO:0005992 trehalose biosynthetic process 12
GO:0006007 glucose catabolic process 14
GO:0006075 (1->3)-beta-D-glucan biosynthetic process 26
GO:0006284 base-excision repair 2
GO:0006308 DNA catabolic process 30
GO:0006310 DNA recombination 4
GO:0006352 DNA-templated transcription, initiation 12
GO:0006355 regulation of transcription, DNA-templated 18
GO:0006357 regulation of transcription by RNA polymerase II 34
GO:0006422 aspartyl-tRNA aminoacylation 32
GO:0006426 glycyl-tRNA aminoacylation 26
GO:0006429 leucyl-tRNA aminoacylation 20
GO:0006431 methionyl-tRNA aminoacylation 8
GO:0006433 prolyl-tRNA aminoacylation 12
GO:0006434 seryl-tRNA aminoacylation 30
GO:0006435 threonyl-tRNA aminoacylation 10
GO:0006438 valyl-tRNA aminoacylation 28
GO:0006464 cellular protein modification process 36
GO:0006468 protein phosphorylation 302
GO:0006480 N-terminal protein amino acid methylation 8
GO:0006486 protein glycosylation 112
GO:0006508 proteolysis 12
GO:0006511 ubiquitin-dependent protein catabolic process 114
GO:0006529 asparagine biosynthetic process 4
GO:0006629 lipid metabolic process 32
GO:0006720 isoprenoid metabolic process 2
GO:0009070 serine family amino acid biosynthetic process 2
GO:0009082 branched-chain amino acid biosynthetic process 4
GO:0009101 glycoprotein biosynthetic process 2
GO:0009143 nucleoside triphosphate catabolic process 6
GO:0009299 mRNA transcription 2
GO:0009963 positive regulation of flavonoid biosynthetic process 10
GO:0010133 proline catabolic process to glutamate 4
GO:0010239 chloroplast mRNA processing 6
GO:0010323 negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway 2
GO:0010373 negative regulation of gibberellin biosynthetic process 2
GO:0010422 regulation of brassinosteroid biosynthetic process 12
GO:0010423 negative regulation of brassinosteroid biosynthetic process 2
GO:0010425 DNA methylation on cytosine within a CNG sequence 4
GO:0010569 regulation of double-strand break repair via homologous recombination 30
GO:0010731 protein glutathionylation 60
GO:0015986 ATP synthesis coupled proton transport 20
GO:0016554 cytidine to uridine editing 4
GO:0016567 protein ubiquitination 354
GO:0016579 protein deubiquitination 6
GO:0018108 peptidyl-tyrosine phosphorylation 4
GO:0018117 protein adenylylation 6
GO:0018279 protein N-linked glycosylation via asparagine 8
GO:0018298 protein-chromophore linkage 4
GO:0019310 inositol catabolic process 24
GO:0019365 pyridine nucleotide salvage 6
GO:0030327 prenylated protein catabolic process 4
GO:0031054 pre-miRNA processing 4
GO:0031222 arabinan catabolic process 2
GO:0031936 negative regulation of chromatin silencing 2
GO:0031937 positive regulation of chromatin silencing 2
GO:0032147 activation of protein kinase activity 4
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 12
GO:0033169 histone H3-K9 demethylation 4
GO:0033306 phytol metabolic process 38
GO:0034477 U6 snRNA 3'-end processing 4
GO:0034660 ncRNA metabolic process 4
GO:0035278 miRNA mediated inhibition of translation 60
GO:0036066 protein O-linked fucosylation 6
GO:0042138 meiotic DNA double-strand break formation 6
GO:0042177 negative regulation of protein catabolic process 22
GO:0042276 error-prone translesion synthesis 8
GO:0042353 fucose biosynthetic process 8
GO:0042868 antisense RNA metabolic process 2
GO:0043968 histone H2A acetylation 2
GO:0045292 mRNA cis splicing, via spliceosome 10
GO:0045493 xylan catabolic process 42
GO:0045828 positive regulation of isoprenoid metabolic process 2
GO:0045951 positive regulation of mitotic recombination 2
GO:0046109 uridine biosynthetic process 4
GO:0046110 xanthine metabolic process 6
GO:0046373 L-arabinose metabolic process 32
GO:0046512 sphingosine biosynthetic process 18
GO:0046514 ceramide catabolic process 4
GO:0046520 sphingoid biosynthetic process 18
GO:0051091 positive regulation of DNA-binding transcription factor activity 6
GO:0051103 DNA ligation involved in DNA repair 14
GO:0070534 protein K63-linked ubiquitination 8
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain 10
GO:0080156 mitochondrial mRNA modification 4
GO:1900364 negative regulation of mRNA polyadenylation 8
GO:1900864 mitochondrial RNA modification 2
GO:1903175 fatty alcohol biosynthetic process 6
GO:1904380 endoplasmic reticulum mannose trimming 6
GO:1904668 positive regulation of ubiquitin protein ligase activity 14
GO:2000234 positive regulation of rRNA processing 6
GO:2000541 positive regulation of protein geranylgeranylation 4
GO:2000653 regulation of genetic imprinting 2
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity 20
GO:0000122 negative regulation of transcription by RNA polymerase II 8
GO:0000154 rRNA modification 12
GO:0000209 protein polyubiquitination 8
GO:0000372 Group I intron splicing 8
GO:0000398 mRNA splicing, via spliceosome 12
GO:0000737 DNA catabolic process, endonucleolytic 20
GO:0001172 transcription, RNA-templated 10
GO:0002084 protein depalmitoylation 6
GO:0002100 tRNA wobble adenosine to inosine editing 2
GO:0006000 fructose metabolic process 2
GO:0006210 thymine catabolic process 2
GO:0006228 UTP biosynthetic process 2
GO:0006351 transcription, DNA-templated 2
GO:0006353 DNA-templated transcription, termination 44
GO:0006360 transcription by RNA polymerase I 8
GO:0006369 termination of RNA polymerase II transcription 12
GO:0006412 translation 8
GO:0006537 glutamate biosynthetic process 6
GO:0006559 L-phenylalanine catabolic process 6
GO:0006633 fatty acid biosynthetic process 68
GO:0006654 phosphatidic acid biosynthetic process 2
GO:0006694 steroid biosynthetic process 4
GO:0006721 terpenoid metabolic process 6
GO:0006722 triterpenoid metabolic process 10
GO:0008299 isoprenoid biosynthetic process 6
GO:0008610 lipid biosynthetic process 4
GO:0009249 protein lipoylation 2
GO:0009250 glucan biosynthetic process 8
GO:0009251 glucan catabolic process 4
GO:0009688 abscisic acid biosynthetic process 6
GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway 2
GO:0010241 ent-kaurene oxidation to kaurenoic acid 44
GO:0010383 cell wall polysaccharide metabolic process 2
GO:0010390 histone monoubiquitination 10
GO:0010398 xylogalacturonan metabolic process 10
GO:0010413 glucuronoxylan metabolic process 8
GO:0010513 positive regulation of phosphatidylinositol biosynthetic process 2
GO:0010599 production of lsiRNA involved in RNA interference 6
GO:0015680 protein maturation by copper ion transfer 4
GO:0015936 coenzyme A metabolic process 2
GO:0015966 diadenosine tetraphosphate biosynthetic process 2
GO:0016042 lipid catabolic process 10
GO:0016540 protein autoprocessing 40
GO:0017196 N-terminal peptidyl-methionine acetylation 6
GO:0018171 peptidyl-cysteine oxidation 2
GO:0019374 galactolipid metabolic process 2
GO:0019408 dolichol biosynthetic process 2
GO:0019538 protein metabolic process 6
GO:0019745 pentacyclic triterpenoid biosynthetic process 2
GO:0030245 cellulose catabolic process 10
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process 2
GO:0031365 N-terminal protein amino acid modification 4
GO:0031508 pericentric heterochromatin assembly 6
GO:0031540 regulation of anthocyanin biosynthetic process 6
GO:0032055 negative regulation of translation in response to stress 2
GO:0032264 IMP salvage 8
GO:0032784 regulation of DNA-templated transcription, elongation 12
GO:0032881 regulation of polysaccharide metabolic process 2
GO:0033387 putrescine biosynthetic process from ornithine 4
GO:0033683 nucleotide-excision repair, DNA incision 8
GO:0033866 nucleoside bisphosphate biosynthetic process 2
GO:0034227 tRNA thio-modification 4
GO:0034414 tRNA 3'-trailer cleavage, endonucleolytic 6
GO:0034472 snRNA 3'-end processing 4
GO:0034587 piRNA metabolic process 2
GO:0034655 nucleobase-containing compound catabolic process 2
GO:0035552 oxidative single-stranded DNA demethylation 2
GO:0035606 peptidyl-cysteine S-trans-nitrosylation 6
GO:0036297 interstrand cross-link repair 28
GO:0043162 ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 2
GO:0043967 histone H4 acetylation 10
GO:0043971 histone H3-K18 acetylation 6
GO:0044205 'de novo' UMP biosynthetic process 34
GO:0044257 cellular protein catabolic process 2
GO:0044267 cellular protein metabolic process 18
GO:0045339 farnesyl diphosphate catabolic process 8
GO:0045723 positive regulation of fatty acid biosynthetic process 16
GO:0045892 negative regulation of transcription, DNA-templated 8
GO:0045893 positive regulation of transcription, DNA-templated 8
GO:0046345 abscisic acid catabolic process 8
GO:0046459 short-chain fatty acid metabolic process 12
GO:0046777 protein autophosphorylation 14
GO:0051973 positive regulation of telomerase activity 18
GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter 6
GO:0070478 nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay 4
GO:0070592 cell wall polysaccharide biosynthetic process 2
GO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay 16
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system 8
GO:0080003 thalianol metabolic process 2
GO:0090065 regulation of production of siRNA involved in RNA interference 2
GO:0090304 nucleic acid metabolic process 6
GO:0090617 mitochondrial mRNA 5'-end processing 8
GO:1900030 regulation of pectin biosynthetic process 4
GO:1901799 negative regulation of proteasomal protein catabolic process 6
GO:1901811 beta-carotene catabolic process 6
GO:1902916 positive regulation of protein polyubiquitination 2
GO:1990426 mitotic recombination-dependent replication fork processing 2
GO:2000083 negative regulation of L-ascorbic acid biosynthetic process 4
GO:2000143 negative regulation of DNA-templated transcription, initiation 2
GO:0000350 generation of catalytic spliceosome for second transesterification step 6
GO:0001561 fatty acid alpha-oxidation 8
GO:0002949 tRNA threonylcarbamoyladenosine modification 4
GO:0006005 L-fucose biosynthetic process 36
GO:0006013 mannose metabolic process 44
GO:0006154 adenosine catabolic process 60
GO:0006182 cGMP biosynthetic process 4
GO:0006233 dTDP biosynthetic process 4
GO:0006259 DNA metabolic process 6
GO:0006269 DNA replication, synthesis of RNA primer 10
GO:0006283 transcription-coupled nucleotide-excision repair 6
GO:0006346 DNA methylation-dependent heterochromatin assembly 2
GO:0006354 DNA-templated transcription, elongation 4
GO:0006364 rRNA processing 8
GO:0006367 transcription initiation from RNA polymerase II promoter 4
GO:0006370 7-methylguanosine mRNA capping 2
GO:0006415 translational termination 12
GO:0006436 tryptophanyl-tRNA aminoacylation 8
GO:0006562 proline catabolic process 2
GO:0006564 L-serine biosynthetic process 2
GO:0006569 tryptophan catabolic process 8
GO:0006572 tyrosine catabolic process 16
GO:0006574 valine catabolic process 14
GO:0006592 ornithine biosynthetic process 4
GO:0006651 diacylglycerol biosynthetic process 8
GO:0006661 phosphatidylinositol biosynthetic process 4
GO:0006671 phytosphingosine metabolic process 4
GO:0007004 telomere maintenance via telomerase 2
GO:0007131 reciprocal meiotic recombination 4
GO:0008612 peptidyl-lysine modification to peptidyl-hypusine 10
GO:0009116 nucleoside metabolic process 18
GO:0009166 nucleotide catabolic process 2
GO:0009452 7-methylguanosine RNA capping 4
GO:0009685 gibberellin metabolic process 12
GO:0009969 xyloglucan biosynthetic process 60
GO:0009972 cytidine deamination 2
GO:0010116 positive regulation of abscisic acid biosynthetic process 8
GO:0010306 rhamnogalacturonan II biosynthetic process 2
GO:0010411 xyloglucan metabolic process 10
GO:0010466 negative regulation of peptidase activity 10
GO:0010581 regulation of starch biosynthetic process 4
GO:0015074 DNA integration 38
GO:0016070 RNA metabolic process 6
GO:0016075 rRNA catabolic process 6
GO:0016102 diterpenoid biosynthetic process 44
GO:0016104 triterpenoid biosynthetic process 2
GO:0016180 snRNA processing 6
GO:0016575 histone deacetylation 4
GO:0017003 protein-heme linkage 4
GO:0017186 peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase 10
GO:0018193 peptidyl-amino acid modification 4
GO:0019252 starch biosynthetic process 2
GO:0019264 glycine biosynthetic process from serine 6
GO:0019305 dTDP-rhamnose biosynthetic process 4
GO:0019318 hexose metabolic process 42
GO:0019346 transsulfuration 4
GO:0019450 L-cysteine catabolic process to pyruvate 36
GO:0019941 modification-dependent protein catabolic process 2
GO:0019988 charged-tRNA amino acid modification 2
GO:0030422 production of siRNA involved in RNA interference 22
GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA 4
GO:0031440 regulation of mRNA 3'-end processing 2
GO:0031542 positive regulation of anthocyanin biosynthetic process 22
GO:0033542 fatty acid beta-oxidation, unsaturated, even number 14
GO:0033567 DNA replication, Okazaki fragment processing 6
GO:0034434 sterol esterification 16
GO:0034470 ncRNA processing 2
GO:0035825 homologous recombination 4
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process 2
GO:0036123 histone H3-K9 dimethylation 4
GO:0036211 protein modification process 6
GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process 10
GO:0042758 long-chain fatty acid catabolic process 8
GO:0042759 long-chain fatty acid biosynthetic process 8
GO:0043100 pyrimidine nucleobase salvage 10
GO:0043433 negative regulation of DNA-binding transcription factor activity 4
GO:0043686 co-translational protein modification 2
GO:0043970 histone H3-K9 acetylation 2
GO:0044255 cellular lipid metabolic process 6
GO:0045014 carbon catabolite repression of transcription by glucose 4
GO:0045489 pectin biosynthetic process 8
GO:0045732 positive regulation of protein catabolic process 2
GO:0045910 negative regulation of DNA recombination 24
GO:0046473 phosphatidic acid metabolic process 4
GO:0046855 inositol phosphate dephosphorylation 4
GO:0051070 galactomannan biosynthetic process 26
GO:0051571 positive regulation of histone H3-K4 methylation 4
GO:0070179 D-serine biosynthetic process 34
GO:0070897 transcription preinitiation complex assembly 12
GO:0071076 RNA 3' uridylation 26
GO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway 10
GO:0080058 protein deglutathionylation 4
GO:0090153 regulation of sphingolipid biosynthetic process 4
GO:0097264 self proteolysis 2
GO:0097359 UDP-glucosylation 4
GO:0106118 regulation of sterol biosynthetic process 2
GO:1900384 regulation of flavonol biosynthetic process 6
GO:1903730 regulation of phosphatidate phosphatase activity 2
GO:1990116 ribosome-associated ubiquitin-dependent protein catabolic process 8
GO:2001253 regulation of histone H3-K36 trimethylation 2
GO:0000272 polysaccharide catabolic process 4
GO:0000373 Group II intron splicing 4
GO:0000380 alternative mRNA splicing, via spliceosome 4
GO:0000469 cleavage involved in rRNA processing 2
GO:0000720 pyrimidine dimer repair by nucleotide-excision repair 2
GO:0000730 DNA recombinase assembly 2
GO:0000963 mitochondrial RNA processing 8
GO:0000964 mitochondrial RNA 5'-end processing 4
GO:0001676 long-chain fatty acid metabolic process 2
GO:0002943 tRNA dihydrouridine synthesis 6
GO:0005996 monosaccharide metabolic process 2
GO:0006006 glucose metabolic process 6
GO:0006060 sorbitol metabolic process 10
GO:0006099 tricarboxylic acid cycle 2
GO:0006139 nucleobase-containing compound metabolic process 6
GO:0006148 inosine catabolic process 4
GO:0006177 GMP biosynthetic process 2
GO:0006218 uridine catabolic process 8
GO:0006265 DNA topological change 2
GO:0006295 nucleotide-excision repair, DNA incision, 3'-to lesion 2
GO:0006312 mitotic recombination 6
GO:0006376 mRNA splice site selection 8
GO:0006379 mRNA cleavage 2
GO:0006384 transcription initiation from RNA polymerase III promoter 4
GO:0006417 regulation of translation 4
GO:0006419 alanyl-tRNA aminoacylation 10
GO:0006420 arginyl-tRNA aminoacylation 4
GO:0006432 phenylalanyl-tRNA aminoacylation 4
GO:0006465 signal peptide processing 4
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins 2
GO:0006542 glutamine biosynthetic process 4
GO:0006753 nucleoside phosphate metabolic process 2
GO:0008380 RNA splicing 2
GO:0009063 cellular amino acid catabolic process 2
GO:0009073 aromatic amino acid family biosynthetic process 4
GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway 2
GO:0009100 glycoprotein metabolic process 2
GO:0009173 pyrimidine ribonucleoside monophosphate metabolic process 2
GO:0009311 oligosaccharide metabolic process 2
GO:0010206 photosystem II repair 2
GO:0010371 regulation of gibberellin biosynthetic process 8
GO:0010409 extensin metabolic process 4
GO:0010493 Lewis a epitope biosynthetic process 2
GO:0010501 RNA secondary structure unwinding 12
GO:0010896 regulation of triglyceride catabolic process 4
GO:0010906 regulation of glucose metabolic process 16
GO:0016131 brassinosteroid metabolic process 2
GO:0016480 negative regulation of transcription by RNA polymerase III 4
GO:0016485 protein processing 6
GO:0017009 protein-phycocyanobilin linkage 8
GO:0018205 peptidyl-lysine modification 2
GO:0018230 peptidyl-L-cysteine S-palmitoylation 2
GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline 8
GO:0019218 regulation of steroid metabolic process 4
GO:0019481 L-alanine catabolic process, by transamination 30
GO:0019677 NAD catabolic process 4
GO:0030162 regulation of proteolysis 2
GO:0030174 regulation of DNA-dependent DNA replication initiation 2
GO:0030592 DNA ADP-ribosylation 16
GO:0031119 tRNA pseudouridine synthesis 2
GO:0031145 anaphase-promoting complex-dependent catabolic process 2
GO:0031297 replication fork processing 10
GO:0033259 plastid DNA replication 2
GO:0033389 putrescine biosynthetic process from arginine, using agmatinase 8
GO:0034654 nucleobase-containing compound biosynthetic process 4
GO:0042351 'de novo' GDP-L-fucose biosynthetic process 12
GO:0042761 very long-chain fatty acid biosynthetic process 6
GO:0043144 sno(s)RNA processing 2
GO:0044264 cellular polysaccharide metabolic process 2
GO:0044648 histone H3-K4 dimethylation 2
GO:0045490 pectin catabolic process 6
GO:0045727 positive regulation of translation 6
GO:0045901 positive regulation of translational elongation 2
GO:0045944 positive regulation of transcription by RNA polymerase II 14
GO:0046340 diacylglycerol catabolic process 2
GO:0048358 mucilage pectin biosynthetic process 2
GO:0051573 negative regulation of histone H3-K9 methylation 6
GO:0051791 medium-chain fatty acid metabolic process 4
GO:0062052 starch granule initiation 2
GO:0070150 mitochondrial glycyl-tRNA aminoacylation 2
GO:0070262 peptidyl-serine dephosphorylation 10
GO:0070476 rRNA (guanine-N7)-methylation 2
GO:0070716 mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication 2
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 6
GO:0071712 ER-associated misfolded protein catabolic process 4
GO:0072344 rescue of stalled ribosome 16
GO:0072355 histone H3-T3 phosphorylation 4
GO:0080065 4-alpha-methyl-delta7-sterol oxidation 4
GO:0080182 histone H3-K4 trimethylation 4
GO:0090305 nucleic acid phosphodiester bond hydrolysis 2
GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic 4
GO:0097659 nucleic acid-templated transcription 2
GO:0098532 histone H3-K27 trimethylation 20
GO:0106074 aminoacyl-tRNA metabolism involved in translational fidelity 2
GO:1901601 strigolactone biosynthetic process 8
GO:1903311 regulation of mRNA metabolic process 4
GO:1903509 liposaccharide metabolic process 4
GO:1904292 regulation of ERAD pathway 4
GO:2000013 regulation of arginine biosynthetic process via ornithine 2
GO:2000117 negative regulation of cysteine-type endopeptidase activity 16
GO:0000024 maltose biosynthetic process 4
GO:0000162 tryptophan biosynthetic process 4
GO:0000183 rDNA heterochromatin assembly 2
GO:0000244 spliceosomal tri-snRNP complex assembly 14
GO:0000374 Group III intron splicing 2
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2
GO:0000495 box H/ACA RNA 3'-end processing 2
GO:0000706 meiotic DNA double-strand break processing 2
GO:0000723 telomere maintenance 8
GO:0000966 RNA 5'-end processing 2
GO:0002182 cytoplasmic translational elongation 6
GO:0002940 tRNA N2-guanine methylation 2
GO:0005993 trehalose catabolic process 4
GO:0006065 UDP-glucuronate biosynthetic process 4
GO:0006104 succinyl-CoA metabolic process 4
GO:0006176 dATP biosynthetic process from ADP 2
GO:0006183 GTP biosynthetic process 2
GO:0006281 DNA repair 4
GO:0006294 nucleotide-excision repair, preincision complex assembly 2
GO:0006348 chromatin silencing at telomere 2
GO:0006400 tRNA modification 4
GO:0006413 translational initiation 2
GO:0006418 tRNA aminoacylation for protein translation 6
GO:0006424 glutamyl-tRNA aminoacylation 8
GO:0006430 lysyl-tRNA aminoacylation 10
GO:0006470 protein dephosphorylation 12
GO:0006490 oligosaccharide-lipid intermediate biosynthetic process 2
GO:0006499 N-terminal protein myristoylation 2
GO:0006516 glycoprotein catabolic process 4
GO:0006636 unsaturated fatty acid biosynthetic process 2
GO:0006715 farnesol biosynthetic process 2
GO:0008213 protein alkylation 2
GO:0009064 glutamine family amino acid metabolic process 2
GO:0009094 L-phenylalanine biosynthetic process 2
GO:0009395 phospholipid catabolic process 4
GO:0009451 RNA modification 6
GO:0010393 galacturonan metabolic process 4
GO:0010430 fatty acid omega-oxidation 4
GO:0015969 guanosine tetraphosphate metabolic process 6
GO:0016101 diterpenoid metabolic process 4
GO:0016106 sesquiterpenoid biosynthetic process 2
GO:0016114 terpenoid biosynthetic process 8
GO:0016124 xanthophyll catabolic process 12
GO:0019216 regulation of lipid metabolic process 4
GO:0019433 triglyceride catabolic process 4
GO:0019544 arginine catabolic process to glutamate 2
GO:0019593 mannitol biosynthetic process 2
GO:0032000 positive regulation of fatty acid beta-oxidation 2
GO:0032049 cardiolipin biosynthetic process 2
GO:0032268 regulation of cellular protein metabolic process 4
GO:0032446 protein modification by small protein conjugation 4
GO:0032774 RNA biosynthetic process 2
GO:0033320 UDP-D-xylose biosynthetic process 2
GO:0033355 ascorbate glutathione cycle 10
GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase 2
GO:0035279 mRNA cleavage involved in gene silencing by miRNA 2
GO:0035616 histone H2B conserved C-terminal lysine deubiquitination 2
GO:0036289 peptidyl-serine autophosphorylation 2
GO:0043255 regulation of carbohydrate biosynthetic process 2
GO:0043407 negative regulation of MAP kinase activity 4
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 2
GO:0043981 histone H4-K5 acetylation 4
GO:0043985 histone H4-R3 methylation 2
GO:0045128 negative regulation of reciprocal meiotic recombination 2
GO:0045492 xylan biosynthetic process 4
GO:0046856 phosphatidylinositol dephosphorylation 4
GO:0048255 mRNA stabilization 2
GO:0048363 mucilage pectin metabolic process 2
GO:0051123 RNA polymerase II preinitiation complex assembly 4
GO:0051762 sesquiterpene biosynthetic process 6
GO:0052324 plant-type cell wall cellulose biosynthetic process 2
GO:0052889 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene 2
GO:0060567 negative regulation of DNA-templated transcription, termination 2
GO:0061158 3'-UTR-mediated mRNA destabilization 2
GO:0070481 nuclear-transcribed mRNA catabolic process, non-stop decay 4
GO:0070646 protein modification by small protein removal 4
GO:0070932 histone H3 deacetylation 2
GO:0080163 regulation of protein serine/threonine phosphatase activity 4
GO:0090042 tubulin deacetylation 4
GO:0090359 negative regulation of abscisic acid biosynthetic process 10
GO:0097167 circadian regulation of translation 2
GO:0097222 mitochondrial mRNA polyadenylation 2
GO:0097428 protein maturation by iron-sulfur cluster transfer 8
GO:0106046 guanine deglycation, glyoxal removal 2
GO:1900109 regulation of histone H3-K9 dimethylation 2
GO:1900486 positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway 2
GO:1900871 chloroplast mRNA modification 6
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain 2
GO:1901535 regulation of DNA demethylation 2
GO:1901997 negative regulation of indoleacetic acid biosynthetic process via tryptophan 6
GO:1902066 regulation of cell wall pectin metabolic process 2
GO:1904294 positive regulation of ERAD pathway 8
GO:1904964 positive regulation of phytol biosynthetic process 2
GO:1905168 positive regulation of double-strand break repair via homologous recombination 2
GO:1990619 histone H3-K9 deacetylation 2
GO:2000042 negative regulation of double-strand break repair via homologous recombination 6
GO:2000232 regulation of rRNA processing 4
GO:2001007 negative regulation of cellulose biosynthetic process 4
GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process 2
GO:2001294 malonyl-CoA catabolic process 2
GO:0000012 single strand break repair 4
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 4
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 2
GO:0000395 mRNA 5'-splice site recognition 2
GO:0000453 enzyme-directed rRNA 2'-O-methylation 2
GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2
GO:0000476 maturation of 4.5S rRNA 2
GO:0000738 DNA catabolic process, exonucleolytic 6
GO:0005983 starch catabolic process 2
GO:0005985 sucrose metabolic process 8
GO:0005987 sucrose catabolic process 6
GO:0005997 xylulose metabolic process 2
GO:0006004 fucose metabolic process 2
GO:0006169 adenosine salvage 2
GO:0006226 dUMP biosynthetic process 2
GO:0006273 lagging strand elongation 4
GO:0006315 homing of group II introns 2
GO:0006342 chromatin silencing 4
GO:0006383 transcription by RNA polymerase III 2
GO:0006427 histidyl-tRNA aminoacylation 2
GO:0006428 isoleucyl-tRNA aminoacylation 2
GO:0006488 dolichol-linked oligosaccharide biosynthetic process 2
GO:0006493 protein O-linked glycosylation 4
GO:0006506 GPI anchor biosynthetic process 4
GO:0006624 vacuolar protein processing 2
GO:0006635 fatty acid beta-oxidation 2
GO:0006650 glycerophospholipid metabolic process 2
GO:0006680 glucosylceramide catabolic process 2
GO:0006741 NADP biosynthetic process 4
GO:0008033 tRNA processing 2
GO:0009081 branched-chain amino acid metabolic process 2
GO:0009097 isoleucine biosynthetic process 4
GO:0009134 nucleoside diphosphate catabolic process 2
GO:0009686 gibberellin biosynthetic process 8
GO:0010213 non-photoreactive DNA repair 2
GO:0010406 classical arabinogalactan protein metabolic process 2
GO:0010410 hemicellulose metabolic process 2
GO:0010586 miRNA metabolic process 2
GO:0010587 miRNA catabolic process 2
GO:0010597 green leaf volatile biosynthetic process 2
GO:0010951 negative regulation of endopeptidase activity 6
GO:0015938 coenzyme A catabolic process 2
GO:0015970 guanosine tetraphosphate biosynthetic process 2
GO:0016121 carotene catabolic process 2
GO:0016126 sterol biosynthetic process 2
GO:0016127 sterol catabolic process 2
GO:0016255 attachment of GPI anchor to protein 4
GO:0018142 protein-DNA covalent cross-linking 6
GO:0018209 peptidyl-serine modification 2
GO:0018215 protein phosphopantetheinylation 4
GO:0019219 regulation of nucleobase-containing compound metabolic process 2
GO:0019279 L-methionine biosynthetic process from L-homoserine via cystathionine 2
GO:0019432 triglyceride biosynthetic process 2
GO:0019509 L-methionine salvage from methylthioadenosine 2
GO:0019605 butyrate metabolic process 2
GO:0030244 cellulose biosynthetic process 2
GO:0030433 ubiquitin-dependent ERAD pathway 2
GO:0031063 regulation of histone deacetylation 4
GO:0032212 positive regulation of telomere maintenance via telomerase 2
GO:0033120 positive regulation of RNA splicing 2
GO:0033234 negative regulation of protein sumoylation 2
GO:0033499 galactose catabolic process via UDP-galactose 2
GO:0033506 glucosinolate biosynthetic process from homomethionine 2
GO:0034970 histone H3-R2 methylation 2
GO:0036290 protein trans-autophosphorylation 2
GO:0042732 D-xylose metabolic process 4
GO:0042794 plastid rRNA transcription 2
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 4
GO:0043488 regulation of mRNA stability 2
GO:0043972 histone H3-K23 acetylation 2
GO:0044030 regulation of DNA methylation 2
GO:0044242 cellular lipid catabolic process 2
GO:0045487 gibberellin catabolic process 2
GO:0045717 negative regulation of fatty acid biosynthetic process 2
GO:0045739 positive regulation of DNA repair 2
GO:0046104 thymidine metabolic process 2
GO:0046466 membrane lipid catabolic process 2
GO:0046835 carbohydrate phosphorylation 6
GO:0060195 negative regulation of antisense RNA transcription 2
GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening 2
GO:0071139 resolution of recombination intermediates 2
GO:0071266 'de novo' L-methionine biosynthetic process 2
GO:0071932 replication fork reversal 2
GO:0080009 mRNA methylation 4
GO:0080180 2-methylguanosine metabolic process 4
GO:0090358 positive regulation of tryptophan metabolic process 2
GO:0098789 pre-mRNA cleavage required for polyadenylation 2
GO:0101030 tRNA-guanine transglycosylation 2
GO:0140040 mitochondrial polycistronic RNA processing 2
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1901918 negative regulation of exoribonuclease activity 2
GO:1902466 positive regulation of histone H3-K27 trimethylation 2
GO:1902609 (R)-2-hydroxy-alpha-linolenic acid biosynthetic process 2
GO:1902979 mitotic DNA replication termination 4
GO:1904143 positive regulation of carotenoid biosynthetic process 2
GO:1904667 negative regulation of ubiquitin protein ligase activity 2
GO:1905038 regulation of membrane lipid metabolic process 2
GO:2000082 regulation of L-ascorbic acid biosynthetic process 2
GO:2000904 regulation of starch metabolic process 4
GO:0000032 cell wall mannoprotein biosynthetic process 2
GO:0001731 formation of translation preinitiation complex 2
GO:0006094 gluconeogenesis 2
GO:0006289 nucleotide-excision repair 2
GO:0006557 S-adenosylmethioninamine biosynthetic process 2
GO:0006627 protein processing involved in protein targeting to mitochondrion 2
GO:0006639 acylglycerol metabolic process 2
GO:0008654 phospholipid biosynthetic process 2
GO:0009263 deoxyribonucleotide biosynthetic process 2
GO:0009435 NAD biosynthetic process 2
GO:0010246 rhamnogalacturonan I biosynthetic process 4
GO:0016233 telomere capping 2
GO:0030488 tRNA methylation 2
GO:0032324 molybdopterin cofactor biosynthetic process 2
GO:0034355 NAD salvage 2
GO:0035335 peptidyl-tyrosine dephosphorylation 2
GO:0043137 DNA replication, removal of RNA primer 2
GO:0043543 protein acylation 2
GO:0043666 regulation of phosphoprotein phosphatase activity 2
GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity 2
GO:0050732 negative regulation of peptidyl-tyrosine phosphorylation 2
GO:0071049 nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription 2
GO:0090116 C-5 methylation of cytosine 2
GO:0097510 base-excision repair, AP site formation via deaminated base removal 2
GO:0106005 RNA 5'-cap (guanine-N7)-methylation 2
GO:1900088 regulation of inositol biosynthetic process 2
GO:1900386 positive regulation of flavonol biosynthetic process 2
GO:1902006 negative regulation of proline biosynthetic process 2
GO:2001280 positive regulation of unsaturated fatty acid biosynthetic process 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001