Functional clusters
Information
- Type Gene Ontology
- Description xyloglucan biosynthetic process
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brachypodium distachyon | Bd1 | 3 | CH_bdi_53 | 4 | 4 | 0.000000000503079 |
| Calamus simplicifolius | scaffold446 | 3 | CH_calsi_107 | 3 | 3 | 0.00000193345 |
| Cenchrus purpureus | GWHAORA00000004 | 3 | CH_cpu_417 | 3 | 3 | 0.00000290144 |
| Digitaria exilis | Dexi_CM05836_chr09A | 3 | CH_dex_145 | 5 | 10 | 0.00000000102547 |
| Digitaria exilis | Dexi_CM05836_chr01A | 3 | CH_dex_175 | 4 | 4 | 0.00000000739624 |
| Eragrostis curvula | 5 | 3 | CH_ecu_229 | 5 | 14 | 0.000000000891326 |
| Hordeum vulgare | chr5H | 3 | CH_hvu_45 | 6 | 13 | 0.000000000000115152 |
| Lolium perenne | Lp_chr4_0 | 3 | CH_lpe_82 | 5 | 25 | 0.00000000185187 |
| Oryza alta | GWHAZTO00000015 | 3 | CH_oal_377 | 3 | 5 | 0.0000140048 |
| Oryza alta | GWHAZTO00000003 | 3 | CH_oal_413 | 3 | 6 | 0.0000280047 |
| Oryza brachyantha | 3 | 3 | CH_obr_143 | 3 | 4 | 0.00000612149 |
| Oryza sativa ssp. indica | Chr3 | 3 | CH_osaindica_178 | 3 | 4 | 0.00000352227 |
| Oryza sativa Kitaake | Chr3 | 3 | CH_osak_235 | 3 | 4 | 0.00000543528 |
| Phyllostachys edulis | hic_scaffold_15 | 3 | CH_ped_118 | 4 | 5 | 0.0000000107791 |
| Panicum hallii | Chr01 | 3 | CH_pha_186 | 3 | 3 | 0.00000283665 |
| Panicum hallii | Chr09 | 3 | CH_pha_204 | 3 | 4 | 0.0000113431 |
| Sorghum bicolor | Chr01 | 3 | CH_sbi_223 | 3 | 4 | 0.00000939407 |
| Sorghum bicolor | Chr04 | 3 | CH_sbi_224 | 3 | 4 | 0.00000939407 |
| Secale cereale | GWHASIY00000005 | 3 | CH_sce_449 | 3 | 5 | 0.0000354251 |
| Setaria italica | scaffold_1 | 3 | CH_sit_106 | 4 | 4 | 0.00000000139635 |
| Setaria italica | scaffold_9 | 3 | CH_sit_262 | 3 | 5 | 0.0000343422 |
| Setaria viridis | Chr_01 | 3 | CH_svi_101 | 4 | 4 | 0.00000000101439 |
| Setaria viridis | Chr_09 | 3 | CH_svi_260 | 3 | 4 | 0.0000111051 |
| Triticum aestivum | Chr5A | 3 | CH_tae_111 | 7 | 10 | 4.68381e-17 |
| Triticum aestivum | Chr5B | 3 | CH_tae_120 | 7 | 11 | 1.28757e-16 |
| Triticum aestivum | Chr5D | 3 | CH_tae_185 | 6 | 9 | 0.0000000000000778929 |
| Triticum dicoccoides | 5B | 3 | CH_tdi_172 | 4 | 7 | 0.0000000481641 |
| Triticum dicoccoides | 5A | 3 | CH_tdi_459 | 3 | 7 | 0.000135169 |
| Triticum turgidum | chr5B | 3 | CH_ttu_126 | 5 | 10 | 0.000000000145369 |
| Vanilla planifolia | JADCNL010000048.1 | 3 | CH_vpl_133 | 3 | 3 | 0.00000458609 |
| Brachypodium distachyon | Bd1 | 4 | CH_bdi_53 | 4 | 4 | 0.000000000503079 |
| Calamus simplicifolius | scaffold446 | 4 | CH_calsi_107 | 3 | 3 | 0.00000193345 |
| Cenchrus purpureus | GWHAORA00000004 | 4 | CH_cpu_417 | 3 | 3 | 0.00000290144 |
| Digitaria exilis | Dexi_CM05836_chr09A | 4 | CH_dex_145 | 5 | 10 | 0.00000000102547 |
| Digitaria exilis | Dexi_CM05836_chr01A | 4 | CH_dex_175 | 4 | 4 | 0.00000000739624 |
| Eragrostis curvula | 5 | 4 | CH_ecu_229 | 5 | 14 | 0.000000000891326 |
| Hordeum vulgare | chr5H | 4 | CH_hvu_45 | 6 | 13 | 0.000000000000115152 |
| Lolium perenne | Lp_chr4_0 | 4 | CH_lpe_82 | 5 | 25 | 0.00000000185187 |
| Oryza alta | GWHAZTO00000015 | 4 | CH_oal_377 | 3 | 5 | 0.0000140048 |
| Oryza alta | GWHAZTO00000003 | 4 | CH_oal_413 | 3 | 6 | 0.0000280047 |
| Oryza brachyantha | 3 | 4 | CH_obr_143 | 3 | 4 | 0.00000612149 |
| Oryza sativa ssp. indica | Chr3 | 4 | CH_osaindica_178 | 3 | 4 | 0.00000352227 |
| Oryza sativa Kitaake | Chr3 | 4 | CH_osak_235 | 3 | 4 | 0.00000543528 |
| Phyllostachys edulis | hic_scaffold_15 | 4 | CH_ped_118 | 4 | 5 | 0.0000000107791 |
| Panicum hallii | Chr01 | 4 | CH_pha_186 | 3 | 3 | 0.00000283665 |
| Panicum hallii | Chr09 | 4 | CH_pha_204 | 3 | 4 | 0.0000113431 |
| Sorghum bicolor | Chr01 | 4 | CH_sbi_223 | 3 | 4 | 0.00000939407 |
| Sorghum bicolor | Chr04 | 4 | CH_sbi_224 | 3 | 4 | 0.00000939407 |
| Secale cereale | GWHASIY00000005 | 4 | CH_sce_449 | 3 | 5 | 0.0000354251 |
| Setaria italica | scaffold_1 | 4 | CH_sit_106 | 4 | 4 | 0.00000000139635 |
| Setaria italica | scaffold_9 | 4 | CH_sit_262 | 3 | 5 | 0.0000343422 |
| Setaria viridis | Chr_01 | 4 | CH_svi_101 | 4 | 4 | 0.00000000101439 |
| Setaria viridis | Chr_09 | 4 | CH_svi_260 | 3 | 4 | 0.0000111051 |
| Triticum aestivum | Chr5A | 4 | CH_tae_111 | 7 | 10 | 4.68381e-17 |
| Triticum aestivum | Chr5B | 4 | CH_tae_120 | 7 | 11 | 1.28757e-16 |
| Triticum aestivum | Chr5D | 4 | CH_tae_185 | 6 | 9 | 0.0000000000000778929 |
| Triticum dicoccoides | 5B | 4 | CH_tdi_172 | 4 | 7 | 0.0000000481641 |
| Triticum dicoccoides | 5A | 4 | CH_tdi_459 | 3 | 7 | 0.000135169 |
| Triticum turgidum | chr5B | 4 | CH_ttu_126 | 5 | 10 | 0.000000000145369 |
| Vanilla planifolia | JADCNL010000048.1 | 4 | CH_vpl_133 | 3 | 3 | 0.00000458609 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |