Functional clusters

Information

  • Type Gene Ontology
  • Description DNA metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Chara braunii BFEA01000022 3 CH_cbr_113 25 79 0.0000806452
Secale cereale GWHASIY00000001 3 CH_sce_724 7 25 0.000493682
Sequoiadendron giganteum chr1 3 CH_sgi_1158 10 50 0.000153993
Chara braunii BFEA01000022 4 CH_cbr_113 25 79 0.0000806452
Secale cereale GWHASIY00000001 4 CH_sce_724 7 25 0.000493682
Sequoiadendron giganteum chr1 4 CH_sgi_1158 10 50 0.000153993

Available child term results

Ontology identifier Description Number of clusters
GO:0000012 single strand break repair 4
GO:0000706 meiotic DNA double-strand break processing 2
GO:0000720 pyrimidine dimer repair by nucleotide-excision repair 2
GO:0000723 telomere maintenance 8
GO:0000730 DNA recombinase assembly 2
GO:0000737 DNA catabolic process, endonucleolytic 20
GO:0000738 DNA catabolic process, exonucleolytic 6
GO:0006265 DNA topological change 2
GO:0006269 DNA replication, synthesis of RNA primer 10
GO:0006273 lagging strand elongation 4
GO:0006281 DNA repair 4
GO:0006283 transcription-coupled nucleotide-excision repair 6
GO:0006284 base-excision repair 2
GO:0006289 nucleotide-excision repair 2
GO:0006294 nucleotide-excision repair, preincision complex assembly 2
GO:0006295 nucleotide-excision repair, DNA incision, 3'-to lesion 2
GO:0006308 DNA catabolic process 30
GO:0006310 DNA recombination 4
GO:0006312 mitotic recombination 6
GO:0006315 homing of group II introns 2
GO:0007004 telomere maintenance via telomerase 2
GO:0007131 reciprocal meiotic recombination 4
GO:0010213 non-photoreactive DNA repair 2
GO:0010425 DNA methylation on cytosine within a CNG sequence 4
GO:0010569 regulation of double-strand break repair via homologous recombination 30
GO:0015074 DNA integration 38
GO:0016233 telomere capping 2
GO:0030174 regulation of DNA-dependent DNA replication initiation 2
GO:0030592 DNA ADP-ribosylation 16
GO:0031297 replication fork processing 10
GO:0032212 positive regulation of telomere maintenance via telomerase 2
GO:0033259 plastid DNA replication 2
GO:0033567 DNA replication, Okazaki fragment processing 6
GO:0033683 nucleotide-excision repair, DNA incision 8
GO:0035552 oxidative single-stranded DNA demethylation 2
GO:0035825 homologous recombination 4
GO:0036297 interstrand cross-link repair 28
GO:0042276 error-prone translesion synthesis 8
GO:0043137 DNA replication, removal of RNA primer 2
GO:0044030 regulation of DNA methylation 2
GO:0045128 negative regulation of reciprocal meiotic recombination 2
GO:0045739 positive regulation of DNA repair 2
GO:0045910 negative regulation of DNA recombination 24
GO:0045951 positive regulation of mitotic recombination 2
GO:0051103 DNA ligation involved in DNA repair 14
GO:0051973 positive regulation of telomerase activity 18
GO:0070716 mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication 2
GO:0071139 resolution of recombination intermediates 2
GO:0071932 replication fork reversal 2
GO:0090116 C-5 methylation of cytosine 2
GO:0097510 base-excision repair, AP site formation via deaminated base removal 2
GO:1901535 regulation of DNA demethylation 2
GO:1902979 mitotic DNA replication termination 4
GO:1905168 positive regulation of double-strand break repair via homologous recombination 2
GO:1990426 mitotic recombination-dependent replication fork processing 2
GO:2000042 negative regulation of double-strand break repair via homologous recombination 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001