Functional clusters

Information

  • Type Gene Ontology
  • Description positive regulation of transcription by RNA polymerase II

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Glycine max Gm10 3 CH_gma_136 6 10 0.00000000447167
Phyllostachys edulis hic_scaffold_7 3 CH_ped_150 5 8 0.00000019287
Populus trichocarpa Chr07 3 CH_ptr_442 3 3 0.000531186
Secale cereale GWHASIY00000003 3 CH_sce_323 4 5 0.00000272765
Secale cereale GWHASIY00000005 3 CH_sce_651 3 3 0.000296277
Sequoiadendron giganteum chr5 3 CH_sgi_1292 4 28 0.000574308
Sequoiadendron giganteum HRSCAF_1 3 CH_sgi_353 6 13 0.0000000000343972
Glycine max Gm10 4 CH_gma_136 6 10 0.00000000447167
Phyllostachys edulis hic_scaffold_7 4 CH_ped_150 5 8 0.00000019287
Populus trichocarpa Chr07 4 CH_ptr_442 3 3 0.000531186
Secale cereale GWHASIY00000003 4 CH_sce_323 4 5 0.00000272765
Secale cereale GWHASIY00000005 4 CH_sce_651 3 3 0.000296277
Sequoiadendron giganteum chr5 4 CH_sgi_1292 4 28 0.000574308
Sequoiadendron giganteum HRSCAF_1 4 CH_sgi_353 6 13 0.0000000000343972

Available child term results

Ontology identifier Description Number of clusters
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 12
GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001