Functional clusters
Information
- Type Gene Ontology
- Description fatty acid biosynthetic process
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aegilops tauschii | 7D | 3 | CH_ata_202 | 4 | 4 | 0.0000192463 |
| Amborella trichopoda | AmTr_v1.0_scaffold00014 | 3 | CH_atr_160 | 4 | 4 | 0.000010399 |
| Amborella trichopoda | AmTr_v1.0_scaffold00129 | 3 | CH_atr_18 | 13 | 30 | 5.28061e-19 |
| Brachypodium distachyon | Bd1 | 3 | CH_bdi_212 | 4 | 6 | 0.0000778046 |
| Cenchrus purpureus | GWHAORA00000004 | 3 | CH_cpu_193 | 6 | 6 | 0.000000000649688 |
| Cenchrus purpureus | GWHAORA00000012 | 3 | CH_cpu_419 | 5 | 7 | 0.00000293903 |
| Digitaria exilis | Dexi_CM05836_chr04A | 3 | CH_dex_292 | 5 | 8 | 0.00000135138 |
| Digitaria exilis | Dexi_CM05836_chr04B | 3 | CH_dex_415 | 4 | 5 | 0.0000368571 |
| Hordeum vulgare | chr7H | 3 | CH_hvu_407 | 4 | 8 | 0.000434111 |
| Hordeum vulgare | chr7H | 3 | CH_hvu_51 | 9 | 22 | 0.00000000000111764 |
| Miscanthus sinensis | Chr18 | 3 | CH_msi_139 | 6 | 9 | 0.0000000134973 |
| Miscanthus sinensis | Chr19 | 3 | CH_msi_83 | 7 | 11 | 0.00000000019315 |
| Oryza sativa Kitaake | Chr6 | 3 | CH_osak_312 | 4 | 6 | 0.0000851282 |
| Phyllostachys edulis | hic_scaffold_6 | 3 | CH_ped_368 | 4 | 5 | 0.000158011 |
| Phyllostachys edulis | hic_scaffold_8 | 3 | CH_ped_75 | 9 | 20 | 0.0000000000150999 |
| Panicum hallii | Chr04 | 3 | CH_pha_101 | 6 | 10 | 0.0000000131529 |
| Populus trichocarpa | Chr10 | 3 | CH_ptr_88 | 8 | 9 | 0.000000000000102797 |
| Sorghum bicolor | Chr10 | 3 | CH_sbi_92 | 7 | 14 | 0.00000000203351 |
| Secale cereale | GWHASIY00000004 | 3 | CH_sce_175 | 6 | 9 | 0.0000000213769 |
| Secale cereale | GWHASIY00000004 | 3 | CH_sce_368 | 5 | 9 | 0.0000076295 |
| Setaria italica | scaffold_4 | 3 | CH_sit_327 | 4 | 6 | 0.000126484 |
| Solanum lycopersicum | SL4.0ch06 | 3 | CH_sly_278 | 4 | 4 | 0.0000116421 |
| Saccharum spontaneum | Chr8D | 3 | CH_ssp_754 | 7 | 51 | 0.00020958 |
| Setaria viridis | Chr_04 | 3 | CH_svi_199 | 5 | 8 | 0.00000124094 |
| Triticum aestivum | Chr7D | 3 | CH_tae_512 | 5 | 5 | 0.0000000773993 |
| Triticum aestivum | Chr7D | 3 | CH_tae_548 | 6 | 11 | 0.000000130361 |
| Triticum aestivum | Chr7B | 3 | CH_tae_911 | 5 | 10 | 0.0000192046 |
| Triticum aestivum | Chr7A | 3 | CH_tae_919 | 4 | 4 | 0.0000208434 |
| Triticum dicoccoides | 7B | 3 | CH_tdi_168 | 6 | 10 | 0.0000000435291 |
| Triticum dicoccoides | 7A | 3 | CH_tdi_334 | 5 | 10 | 0.0000137608 |
| Triticum dicoccoides | 7B | 3 | CH_tdi_337 | 4 | 4 | 0.0000146005 |
| Triticum dicoccoides | 4A | 3 | CH_tdi_508 | 4 | 6 | 0.000217672 |
| Triticum turgidum | chr7A | 3 | CH_ttu_342 | 5 | 7 | 0.00000225657 |
| Triticum turgidum | chr6B | 3 | CH_ttu_513 | 4 | 5 | 0.000122816 |
| Aegilops tauschii | 7D | 4 | CH_ata_202 | 4 | 4 | 0.0000192463 |
| Amborella trichopoda | AmTr_v1.0_scaffold00014 | 4 | CH_atr_160 | 4 | 4 | 0.000010399 |
| Amborella trichopoda | AmTr_v1.0_scaffold00129 | 4 | CH_atr_18 | 13 | 30 | 5.28061e-19 |
| Brachypodium distachyon | Bd1 | 4 | CH_bdi_212 | 4 | 6 | 0.0000778046 |
| Cenchrus purpureus | GWHAORA00000004 | 4 | CH_cpu_193 | 6 | 6 | 0.000000000649688 |
| Cenchrus purpureus | GWHAORA00000012 | 4 | CH_cpu_419 | 5 | 7 | 0.00000293903 |
| Digitaria exilis | Dexi_CM05836_chr04A | 4 | CH_dex_292 | 5 | 8 | 0.00000135138 |
| Digitaria exilis | Dexi_CM05836_chr04B | 4 | CH_dex_415 | 4 | 5 | 0.0000368571 |
| Hordeum vulgare | chr7H | 4 | CH_hvu_407 | 4 | 8 | 0.000434111 |
| Hordeum vulgare | chr7H | 4 | CH_hvu_51 | 9 | 22 | 0.00000000000111764 |
| Miscanthus sinensis | Chr18 | 4 | CH_msi_139 | 6 | 9 | 0.0000000134973 |
| Miscanthus sinensis | Chr19 | 4 | CH_msi_83 | 7 | 11 | 0.00000000019315 |
| Oryza sativa Kitaake | Chr6 | 4 | CH_osak_312 | 4 | 6 | 0.0000851282 |
| Phyllostachys edulis | hic_scaffold_6 | 4 | CH_ped_368 | 4 | 5 | 0.000158011 |
| Phyllostachys edulis | hic_scaffold_8 | 4 | CH_ped_75 | 9 | 20 | 0.0000000000150999 |
| Panicum hallii | Chr04 | 4 | CH_pha_101 | 6 | 10 | 0.0000000131529 |
| Populus trichocarpa | Chr10 | 4 | CH_ptr_88 | 8 | 9 | 0.000000000000102797 |
| Sorghum bicolor | Chr10 | 4 | CH_sbi_92 | 7 | 14 | 0.00000000203351 |
| Secale cereale | GWHASIY00000004 | 4 | CH_sce_175 | 6 | 9 | 0.0000000213769 |
| Secale cereale | GWHASIY00000004 | 4 | CH_sce_368 | 5 | 9 | 0.0000076295 |
| Setaria italica | scaffold_4 | 4 | CH_sit_327 | 4 | 6 | 0.000126484 |
| Solanum lycopersicum | SL4.0ch06 | 4 | CH_sly_278 | 4 | 4 | 0.0000116421 |
| Saccharum spontaneum | Chr8D | 4 | CH_ssp_754 | 7 | 51 | 0.00020958 |
| Setaria viridis | Chr_04 | 4 | CH_svi_199 | 5 | 8 | 0.00000124094 |
| Triticum aestivum | Chr7D | 4 | CH_tae_512 | 5 | 5 | 0.0000000773993 |
| Triticum aestivum | Chr7D | 4 | CH_tae_548 | 6 | 11 | 0.000000130361 |
| Triticum aestivum | Chr7B | 4 | CH_tae_911 | 5 | 10 | 0.0000192046 |
| Triticum aestivum | Chr7A | 4 | CH_tae_919 | 4 | 4 | 0.0000208434 |
| Triticum dicoccoides | 7B | 4 | CH_tdi_168 | 6 | 10 | 0.0000000435291 |
| Triticum dicoccoides | 7A | 4 | CH_tdi_334 | 5 | 10 | 0.0000137608 |
| Triticum dicoccoides | 7B | 4 | CH_tdi_337 | 4 | 4 | 0.0000146005 |
| Triticum dicoccoides | 4A | 4 | CH_tdi_508 | 4 | 6 | 0.000217672 |
| Triticum turgidum | chr7A | 4 | CH_ttu_342 | 5 | 7 | 0.00000225657 |
| Triticum turgidum | chr6B | 4 | CH_ttu_513 | 4 | 5 | 0.000122816 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0006636 | unsaturated fatty acid biosynthetic process | 2 |
| GO:0042759 | long-chain fatty acid biosynthetic process | 8 |
| GO:0042761 | very long-chain fatty acid biosynthetic process | 6 |
| GO:0045717 | negative regulation of fatty acid biosynthetic process | 2 |
| GO:0045723 | positive regulation of fatty acid biosynthetic process | 16 |
| GO:1902609 | (R)-2-hydroxy-alpha-linolenic acid biosynthetic process | 2 |
| GO:2001280 | positive regulation of unsaturated fatty acid biosynthetic process | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |