Functional clusters

Information

  • Type Gene Ontology
  • Description regulation of nucleobase-containing compound metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Triticum aestivum Chr4A 3 CH_tae_1163 10 16 0.000224881
Triticum aestivum Chr4A 4 CH_tae_1163 10 16 0.000224881

Available child term results

Ontology identifier Description Number of clusters
GO:0000122 negative regulation of transcription by RNA polymerase II 8
GO:0000183 rDNA heterochromatin assembly 2
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 2
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 2
GO:0006342 chromatin silencing 4
GO:0006346 DNA methylation-dependent heterochromatin assembly 2
GO:0006348 chromatin silencing at telomere 2
GO:0006355 regulation of transcription, DNA-templated 18
GO:0006357 regulation of transcription by RNA polymerase II 34
GO:0010569 regulation of double-strand break repair via homologous recombination 30
GO:0016480 negative regulation of transcription by RNA polymerase III 4
GO:0030174 regulation of DNA-dependent DNA replication initiation 2
GO:0031440 regulation of mRNA 3'-end processing 2
GO:0031508 pericentric heterochromatin assembly 6
GO:0031936 negative regulation of chromatin silencing 2
GO:0031937 positive regulation of chromatin silencing 2
GO:0032212 positive regulation of telomere maintenance via telomerase 2
GO:0032784 regulation of DNA-templated transcription, elongation 12
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 12
GO:0033120 positive regulation of RNA splicing 2
GO:0043433 negative regulation of DNA-binding transcription factor activity 4
GO:0043488 regulation of mRNA stability 2
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 2
GO:0044030 regulation of DNA methylation 2
GO:0045014 carbon catabolite repression of transcription by glucose 4
GO:0045128 negative regulation of reciprocal meiotic recombination 2
GO:0045739 positive regulation of DNA repair 2
GO:0045892 negative regulation of transcription, DNA-templated 8
GO:0045893 positive regulation of transcription, DNA-templated 8
GO:0045910 negative regulation of DNA recombination 24
GO:0045944 positive regulation of transcription by RNA polymerase II 14
GO:0045951 positive regulation of mitotic recombination 2
GO:0048255 mRNA stabilization 2
GO:0051091 positive regulation of DNA-binding transcription factor activity 6
GO:0051973 positive regulation of telomerase activity 18
GO:0060195 negative regulation of antisense RNA transcription 2
GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening 2
GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter 6
GO:0060567 negative regulation of DNA-templated transcription, termination 2
GO:0061158 3'-UTR-mediated mRNA destabilization 2
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 6
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain 10
GO:0090065 regulation of production of siRNA involved in RNA interference 2
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1900364 negative regulation of mRNA polyadenylation 8
GO:1900486 positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway 2
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain 2
GO:1901535 regulation of DNA demethylation 2
GO:1901918 negative regulation of exoribonuclease activity 2
GO:1903311 regulation of mRNA metabolic process 4
GO:1905168 positive regulation of double-strand break repair via homologous recombination 2
GO:2000042 negative regulation of double-strand break repair via homologous recombination 6
GO:2000143 negative regulation of DNA-templated transcription, initiation 2
GO:2000232 regulation of rRNA processing 4
GO:2000234 positive regulation of rRNA processing 6
GO:2000653 regulation of genetic imprinting 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001