Functional clusters
Information
- Type Gene Ontology
- Description regulation of transcription by RNA polymerase II
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr5 | 3 | CH_asa_408 | 4 | 4 | 0.0000168884 |
| Aegilops tauschii | 3D | 3 | CH_ata_91 | 6 | 7 | 0.00000000785735 |
| Eragrostis curvula | Contig25 | 3 | CH_ecu_369 | 8 | 39 | 0.000000272659 |
| Hordeum vulgare | chr3H | 3 | CH_hvu_118 | 6 | 9 | 0.00000000781188 |
| Magnolia biondii | Chr11 | 3 | CH_mbi_585 | 4 | 8 | 0.000305778 |
| Oryza alta | GWHAZTO00000007 | 3 | CH_oal_350 | 4 | 4 | 0.00000580751 |
| Secale cereale | GWHASIY00000003 | 3 | CH_sce_223 | 5 | 5 | 0.000000138408 |
| Sequoiadendron giganteum | chr8 | 3 | CH_sgi_267 | 7 | 7 | 0.00000000000037371 |
| Sequoiadendron giganteum | chr8 | 3 | CH_sgi_393 | 10 | 49 | 0.0000000001219 |
| Solanum lycopersicum | SL4.0ch10 | 3 | CH_sly_248 | 6 | 7 | 0.00000432191 |
| Saccharum spontaneum | Chr3B | 3 | CH_ssp_1158 | 4 | 7 | 0.000971508 |
| Triticum aestivum | Chr3B | 3 | CH_tae_28 | 14 | 15 | 8.30668e-27 |
| Triticum aestivum | Chr3D | 3 | CH_tae_437 | 6 | 7 | 0.0000000113768 |
| Triticum aestivum | Chr3A | 3 | CH_tae_606 | 5 | 5 | 0.000000329241 |
| Triticum turgidum | chr3A | 3 | CH_ttu_168 | 6 | 6 | 0.00000000340737 |
| Triticum turgidum | chr3B | 3 | CH_ttu_28 | 11 | 12 | 3.29089e-19 |
| Zea mays B73 | 3 | 3 | CH_zma_206 | 5 | 5 | 0.0000621202 |
| Allium sativum | chr5 | 4 | CH_asa_408 | 4 | 4 | 0.0000168884 |
| Aegilops tauschii | 3D | 4 | CH_ata_91 | 6 | 7 | 0.00000000785735 |
| Eragrostis curvula | Contig25 | 4 | CH_ecu_369 | 8 | 39 | 0.000000272659 |
| Hordeum vulgare | chr3H | 4 | CH_hvu_118 | 6 | 9 | 0.00000000781188 |
| Magnolia biondii | Chr11 | 4 | CH_mbi_585 | 4 | 8 | 0.000305778 |
| Oryza alta | GWHAZTO00000007 | 4 | CH_oal_350 | 4 | 4 | 0.00000580751 |
| Secale cereale | GWHASIY00000003 | 4 | CH_sce_223 | 5 | 5 | 0.000000138408 |
| Sequoiadendron giganteum | chr8 | 4 | CH_sgi_267 | 7 | 7 | 0.00000000000037371 |
| Sequoiadendron giganteum | chr8 | 4 | CH_sgi_393 | 10 | 49 | 0.0000000001219 |
| Solanum lycopersicum | SL4.0ch10 | 4 | CH_sly_248 | 6 | 7 | 0.00000432191 |
| Saccharum spontaneum | Chr3B | 4 | CH_ssp_1158 | 4 | 7 | 0.000971508 |
| Triticum aestivum | Chr3B | 4 | CH_tae_28 | 14 | 15 | 8.30668e-27 |
| Triticum aestivum | Chr3D | 4 | CH_tae_437 | 6 | 7 | 0.0000000113768 |
| Triticum aestivum | Chr3A | 4 | CH_tae_606 | 5 | 5 | 0.000000329241 |
| Triticum turgidum | chr3A | 4 | CH_ttu_168 | 6 | 6 | 0.00000000340737 |
| Triticum turgidum | chr3B | 4 | CH_ttu_28 | 11 | 12 | 3.29089e-19 |
| Zea mays B73 | 3 | 4 | CH_zma_206 | 5 | 5 | 0.0000621202 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0000122 | negative regulation of transcription by RNA polymerase II | 8 |
| GO:0032968 | positive regulation of transcription elongation from RNA polymerase II promoter | 12 |
| GO:0043619 | regulation of transcription from RNA polymerase II promoter in response to oxidative stress | 2 |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | 14 |
| GO:0060261 | positive regulation of transcription initiation from RNA polymerase II promoter | 6 |
| GO:0070940 | dephosphorylation of RNA polymerase II C-terminal domain | 10 |
| GO:1901407 | regulation of phosphorylation of RNA polymerase II C-terminal domain | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |