Functional clusters

Information

  • Type Gene Ontology
  • Description diterpenoid biosynthetic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brachypodium distachyon Bd3 3 CH_bdi_164 3 4 0.0000221018
Brachypodium distachyon Bd5 3 CH_bdi_251 3 7 0.000193158
Calamus simplicifolius scaffold103 3 CH_calsi_36 5 8 0.00000000017337
Dioscorea dumetorum contig553 3 CH_ddu_128 3 3 0.00000486898
Lolium perenne Lp_chr4_0 3 CH_lpe_127 4 6 0.0000000611038
Miscanthus sinensis Chr17 3 CH_msi_197 5 34 0.000000526427
Miscanthus sinensis Chr16 3 CH_msi_206 4 10 0.000000858624
Oryza brachyantha 4 3 CH_obr_78 4 7 0.0000000684117
Oryza sativa Kitaake Chr8 3 CH_osak_263 3 3 0.0000259283
Panicum hallii Chr06 3 CH_pha_230 3 4 0.0000358669
Populus trichocarpa Chr07 3 CH_ptr_120 6 10 0.0000000000214403
Sorghum bicolor Chr07 3 CH_sbi_110 4 4 0.0000000143897
Sorghum bicolor Chr09 3 CH_sbi_301 3 4 0.0000754184
Secale cereale GWHASIY00000003 3 CH_sce_152 5 8 0.00000000687408
Setaria italica scaffold_6 3 CH_sit_160 4 6 0.000000131426
Saccharum spontaneum Chr6D 3 CH_ssp_470 3 3 0.0000121166
Setaria viridis Chr_07 3 CH_svi_422 3 6 0.000331069
Setaria viridis Chr_06 3 CH_svi_85 5 7 0.000000000166208
Triticum aestivum Chr3A 3 CH_tae_1082 3 3 0.000126222
Triticum aestivum Chr5B 3 CH_tae_1083 3 3 0.000126222
Triticum turgidum chr7A 3 CH_ttu_406 4 10 0.0000114049
Triticum turgidum chr2B 3 CH_ttu_531 4 18 0.000165187
Brachypodium distachyon Bd3 4 CH_bdi_164 3 4 0.0000221018
Brachypodium distachyon Bd5 4 CH_bdi_251 3 7 0.000193158
Calamus simplicifolius scaffold103 4 CH_calsi_36 5 8 0.00000000017337
Dioscorea dumetorum contig553 4 CH_ddu_128 3 3 0.00000486898
Lolium perenne Lp_chr4_0 4 CH_lpe_127 4 6 0.0000000611038
Miscanthus sinensis Chr17 4 CH_msi_197 5 34 0.000000526427
Miscanthus sinensis Chr16 4 CH_msi_206 4 10 0.000000858624
Oryza brachyantha 4 4 CH_obr_78 4 7 0.0000000684117
Oryza sativa Kitaake Chr8 4 CH_osak_263 3 3 0.0000259283
Panicum hallii Chr06 4 CH_pha_230 3 4 0.0000358669
Populus trichocarpa Chr07 4 CH_ptr_120 6 10 0.0000000000214403
Sorghum bicolor Chr07 4 CH_sbi_110 4 4 0.0000000143897
Sorghum bicolor Chr09 4 CH_sbi_301 3 4 0.0000754184
Secale cereale GWHASIY00000003 4 CH_sce_152 5 8 0.00000000687408
Setaria italica scaffold_6 4 CH_sit_160 4 6 0.000000131426
Saccharum spontaneum Chr6D 4 CH_ssp_470 3 3 0.0000121166
Setaria viridis Chr_07 4 CH_svi_422 3 6 0.000331069
Setaria viridis Chr_06 4 CH_svi_85 5 7 0.000000000166208
Triticum aestivum Chr3A 4 CH_tae_1082 3 3 0.000126222
Triticum aestivum Chr5B 4 CH_tae_1083 3 3 0.000126222
Triticum turgidum chr7A 4 CH_ttu_406 4 10 0.0000114049
Triticum turgidum chr2B 4 CH_ttu_531 4 18 0.000165187

Available child term results

Ontology identifier Description Number of clusters
GO:0009686 gibberellin biosynthetic process 8
GO:0010371 regulation of gibberellin biosynthetic process 8
GO:0010373 negative regulation of gibberellin biosynthetic process 2
GO:1904964 positive regulation of phytol biosynthetic process 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001