Functional clusters

Information

  • Type Gene Ontology
  • Description nucleic acid metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aegilops tauschii 1D 3 CH_ata_171 10 10 0.00000383032
Secale cereale GWHASIY00000006 3 CH_sce_613 12 18 0.000261331
Saccharum spontaneum Chr7D 3 CH_ssp_985 25 69 0.000540601
Aegilops tauschii 1D 4 CH_ata_171 10 10 0.00000383032
Secale cereale GWHASIY00000006 4 CH_sce_613 12 18 0.000261331
Saccharum spontaneum Chr7D 4 CH_ssp_985 25 69 0.000540601

Available child term results

Ontology identifier Description Number of clusters
GO:0000012 single strand break repair 4
GO:0000122 negative regulation of transcription by RNA polymerase II 8
GO:0000154 rRNA modification 12
GO:0000183 rDNA heterochromatin assembly 2
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 4
GO:0000244 spliceosomal tri-snRNP complex assembly 14
GO:0000245 spliceosomal complex assembly 28
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 2
GO:0000292 RNA fragment catabolic process 2
GO:0000350 generation of catalytic spliceosome for second transesterification step 6
GO:0000372 Group I intron splicing 8
GO:0000373 Group II intron splicing 4
GO:0000374 Group III intron splicing 2
GO:0000380 alternative mRNA splicing, via spliceosome 4
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 2
GO:0000395 mRNA 5'-splice site recognition 2
GO:0000398 mRNA splicing, via spliceosome 12
GO:0000453 enzyme-directed rRNA 2'-O-methylation 2
GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2
GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 12
GO:0000469 cleavage involved in rRNA processing 2
GO:0000476 maturation of 4.5S rRNA 2
GO:0000495 box H/ACA RNA 3'-end processing 2
GO:0000706 meiotic DNA double-strand break processing 2
GO:0000720 pyrimidine dimer repair by nucleotide-excision repair 2
GO:0000723 telomere maintenance 8
GO:0000730 DNA recombinase assembly 2
GO:0000737 DNA catabolic process, endonucleolytic 20
GO:0000738 DNA catabolic process, exonucleolytic 6
GO:0000963 mitochondrial RNA processing 8
GO:0000964 mitochondrial RNA 5'-end processing 4
GO:0000966 RNA 5'-end processing 2
GO:0001172 transcription, RNA-templated 10
GO:0001188 RNA polymerase I preinitiation complex assembly 10
GO:0002100 tRNA wobble adenosine to inosine editing 2
GO:0002940 tRNA N2-guanine methylation 2
GO:0002943 tRNA dihydrouridine synthesis 6
GO:0002949 tRNA threonylcarbamoyladenosine modification 4
GO:0006259 DNA metabolic process 6
GO:0006265 DNA topological change 2
GO:0006269 DNA replication, synthesis of RNA primer 10
GO:0006273 lagging strand elongation 4
GO:0006281 DNA repair 4
GO:0006283 transcription-coupled nucleotide-excision repair 6
GO:0006284 base-excision repair 2
GO:0006289 nucleotide-excision repair 2
GO:0006294 nucleotide-excision repair, preincision complex assembly 2
GO:0006295 nucleotide-excision repair, DNA incision, 3'-to lesion 2
GO:0006308 DNA catabolic process 30
GO:0006310 DNA recombination 4
GO:0006312 mitotic recombination 6
GO:0006315 homing of group II introns 2
GO:0006342 chromatin silencing 4
GO:0006346 DNA methylation-dependent heterochromatin assembly 2
GO:0006348 chromatin silencing at telomere 2
GO:0006351 transcription, DNA-templated 2
GO:0006352 DNA-templated transcription, initiation 12
GO:0006353 DNA-templated transcription, termination 44
GO:0006354 DNA-templated transcription, elongation 4
GO:0006355 regulation of transcription, DNA-templated 18
GO:0006357 regulation of transcription by RNA polymerase II 34
GO:0006360 transcription by RNA polymerase I 8
GO:0006364 rRNA processing 8
GO:0006367 transcription initiation from RNA polymerase II promoter 4
GO:0006369 termination of RNA polymerase II transcription 12
GO:0006370 7-methylguanosine mRNA capping 2
GO:0006376 mRNA splice site selection 8
GO:0006379 mRNA cleavage 2
GO:0006383 transcription by RNA polymerase III 2
GO:0006384 transcription initiation from RNA polymerase III promoter 4
GO:0006400 tRNA modification 4
GO:0006418 tRNA aminoacylation for protein translation 6
GO:0006419 alanyl-tRNA aminoacylation 10
GO:0006420 arginyl-tRNA aminoacylation 4
GO:0006422 aspartyl-tRNA aminoacylation 32
GO:0006424 glutamyl-tRNA aminoacylation 8
GO:0006426 glycyl-tRNA aminoacylation 26
GO:0006427 histidyl-tRNA aminoacylation 2
GO:0006428 isoleucyl-tRNA aminoacylation 2
GO:0006429 leucyl-tRNA aminoacylation 20
GO:0006430 lysyl-tRNA aminoacylation 10
GO:0006431 methionyl-tRNA aminoacylation 8
GO:0006432 phenylalanyl-tRNA aminoacylation 4
GO:0006433 prolyl-tRNA aminoacylation 12
GO:0006434 seryl-tRNA aminoacylation 30
GO:0006435 threonyl-tRNA aminoacylation 10
GO:0006436 tryptophanyl-tRNA aminoacylation 8
GO:0006438 valyl-tRNA aminoacylation 28
GO:0007004 telomere maintenance via telomerase 2
GO:0007131 reciprocal meiotic recombination 4
GO:0008033 tRNA processing 2
GO:0008380 RNA splicing 2
GO:0009299 mRNA transcription 2
GO:0009451 RNA modification 6
GO:0009452 7-methylguanosine RNA capping 4
GO:0010213 non-photoreactive DNA repair 2
GO:0010239 chloroplast mRNA processing 6
GO:0010425 DNA methylation on cytosine within a CNG sequence 4
GO:0010501 RNA secondary structure unwinding 12
GO:0010569 regulation of double-strand break repair via homologous recombination 30
GO:0010586 miRNA metabolic process 2
GO:0010587 miRNA catabolic process 2
GO:0010599 production of lsiRNA involved in RNA interference 6
GO:0015074 DNA integration 38
GO:0016070 RNA metabolic process 6
GO:0016075 rRNA catabolic process 6
GO:0016180 snRNA processing 6
GO:0016233 telomere capping 2
GO:0016480 negative regulation of transcription by RNA polymerase III 4
GO:0016554 cytidine to uridine editing 4
GO:0019988 charged-tRNA amino acid modification 2
GO:0030174 regulation of DNA-dependent DNA replication initiation 2
GO:0030422 production of siRNA involved in RNA interference 22
GO:0030488 tRNA methylation 2
GO:0030592 DNA ADP-ribosylation 16
GO:0031054 pre-miRNA processing 4
GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA 4
GO:0031119 tRNA pseudouridine synthesis 2
GO:0031297 replication fork processing 10
GO:0031440 regulation of mRNA 3'-end processing 2
GO:0031508 pericentric heterochromatin assembly 6
GO:0031936 negative regulation of chromatin silencing 2
GO:0031937 positive regulation of chromatin silencing 2
GO:0032212 positive regulation of telomere maintenance via telomerase 2
GO:0032774 RNA biosynthetic process 2
GO:0032784 regulation of DNA-templated transcription, elongation 12
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 12
GO:0033120 positive regulation of RNA splicing 2
GO:0033259 plastid DNA replication 2
GO:0033567 DNA replication, Okazaki fragment processing 6
GO:0033683 nucleotide-excision repair, DNA incision 8
GO:0034227 tRNA thio-modification 4
GO:0034414 tRNA 3'-trailer cleavage, endonucleolytic 6
GO:0034470 ncRNA processing 2
GO:0034472 snRNA 3'-end processing 4
GO:0034477 U6 snRNA 3'-end processing 4
GO:0034587 piRNA metabolic process 2
GO:0034660 ncRNA metabolic process 4
GO:0035279 mRNA cleavage involved in gene silencing by miRNA 2
GO:0035552 oxidative single-stranded DNA demethylation 2
GO:0035825 homologous recombination 4
GO:0036297 interstrand cross-link repair 28
GO:0042138 meiotic DNA double-strand break formation 6
GO:0042276 error-prone translesion synthesis 8
GO:0042794 plastid rRNA transcription 2
GO:0042868 antisense RNA metabolic process 2
GO:0043137 DNA replication, removal of RNA primer 2
GO:0043144 sno(s)RNA processing 2
GO:0043433 negative regulation of DNA-binding transcription factor activity 4
GO:0043488 regulation of mRNA stability 2
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 2
GO:0044030 regulation of DNA methylation 2
GO:0045014 carbon catabolite repression of transcription by glucose 4
GO:0045128 negative regulation of reciprocal meiotic recombination 2
GO:0045292 mRNA cis splicing, via spliceosome 10
GO:0045739 positive regulation of DNA repair 2
GO:0045892 negative regulation of transcription, DNA-templated 8
GO:0045893 positive regulation of transcription, DNA-templated 8
GO:0045910 negative regulation of DNA recombination 24
GO:0045944 positive regulation of transcription by RNA polymerase II 14
GO:0045951 positive regulation of mitotic recombination 2
GO:0048255 mRNA stabilization 2
GO:0051091 positive regulation of DNA-binding transcription factor activity 6
GO:0051103 DNA ligation involved in DNA repair 14
GO:0051123 RNA polymerase II preinitiation complex assembly 4
GO:0051973 positive regulation of telomerase activity 18
GO:0060195 negative regulation of antisense RNA transcription 2
GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening 2
GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter 6
GO:0060567 negative regulation of DNA-templated transcription, termination 2
GO:0061158 3'-UTR-mediated mRNA destabilization 2
GO:0070150 mitochondrial glycyl-tRNA aminoacylation 2
GO:0070476 rRNA (guanine-N7)-methylation 2
GO:0070478 nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay 4
GO:0070481 nuclear-transcribed mRNA catabolic process, non-stop decay 4
GO:0070716 mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication 2
GO:0070897 transcription preinitiation complex assembly 12
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 6
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain 10
GO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay 16
GO:0071049 nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription 2
GO:0071076 RNA 3' uridylation 26
GO:0071139 resolution of recombination intermediates 2
GO:0071932 replication fork reversal 2
GO:0080009 mRNA methylation 4
GO:0080156 mitochondrial mRNA modification 4
GO:0090065 regulation of production of siRNA involved in RNA interference 2
GO:0090116 C-5 methylation of cytosine 2
GO:0090305 nucleic acid phosphodiester bond hydrolysis 2
GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic 4
GO:0090617 mitochondrial mRNA 5'-end processing 8
GO:0097222 mitochondrial mRNA polyadenylation 2
GO:0097510 base-excision repair, AP site formation via deaminated base removal 2
GO:0097659 nucleic acid-templated transcription 2
GO:0098789 pre-mRNA cleavage required for polyadenylation 2
GO:0101030 tRNA-guanine transglycosylation 2
GO:0106005 RNA 5'-cap (guanine-N7)-methylation 2
GO:0106074 aminoacyl-tRNA metabolism involved in translational fidelity 2
GO:0140040 mitochondrial polycistronic RNA processing 2
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1900364 negative regulation of mRNA polyadenylation 8
GO:1900864 mitochondrial RNA modification 2
GO:1900871 chloroplast mRNA modification 6
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain 2
GO:1901535 regulation of DNA demethylation 2
GO:1901918 negative regulation of exoribonuclease activity 2
GO:1902979 mitotic DNA replication termination 4
GO:1903311 regulation of mRNA metabolic process 4
GO:1905168 positive regulation of double-strand break repair via homologous recombination 2
GO:1990426 mitotic recombination-dependent replication fork processing 2
GO:2000042 negative regulation of double-strand break repair via homologous recombination 6
GO:2000143 negative regulation of DNA-templated transcription, initiation 2
GO:2000232 regulation of rRNA processing 4
GO:2000234 positive regulation of rRNA processing 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001