Functional clusters

Information

  • Type Gene Ontology
  • Description RNA modification

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Oryza sativa Kitaake Chr4 3 CH_osak_244 5 11 0.0000094061
Secale cereale GWHASIY00000006 3 CH_sce_273 5 7 0.000000772522
Zostera marina scaffold_7 3 CH_zosmarina_82 4 4 0.0000306818
Oryza sativa Kitaake Chr4 4 CH_osak_244 5 11 0.0000094061
Secale cereale GWHASIY00000006 4 CH_sce_273 5 7 0.000000772522
Zostera marina scaffold_7 4 CH_zosmarina_82 4 4 0.0000306818

Available child term results

Ontology identifier Description Number of clusters
GO:0000154 rRNA modification 12
GO:0000453 enzyme-directed rRNA 2'-O-methylation 2
GO:0002100 tRNA wobble adenosine to inosine editing 2
GO:0002940 tRNA N2-guanine methylation 2
GO:0002943 tRNA dihydrouridine synthesis 6
GO:0002949 tRNA threonylcarbamoyladenosine modification 4
GO:0006400 tRNA modification 4
GO:0016554 cytidine to uridine editing 4
GO:0019988 charged-tRNA amino acid modification 2
GO:0030488 tRNA methylation 2
GO:0031119 tRNA pseudouridine synthesis 2
GO:0034227 tRNA thio-modification 4
GO:0070476 rRNA (guanine-N7)-methylation 2
GO:0080009 mRNA methylation 4
GO:0080156 mitochondrial mRNA modification 4
GO:0101030 tRNA-guanine transglycosylation 2
GO:0106005 RNA 5'-cap (guanine-N7)-methylation 2
GO:1900864 mitochondrial RNA modification 2
GO:1900871 chloroplast mRNA modification 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001