Functional clusters

Information

  • Type Gene Ontology
  • Description RNA biosynthetic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Oropetium thomaeum Chromosome_2 3 CH_oth_231 13 74 0.000895728
Oropetium thomaeum Chromosome_2 4 CH_oth_231 13 74 0.000895728

Available child term results

Ontology identifier Description Number of clusters
GO:0000122 negative regulation of transcription by RNA polymerase II 8
GO:0000183 rDNA heterochromatin assembly 2
GO:0001172 transcription, RNA-templated 10
GO:0001188 RNA polymerase I preinitiation complex assembly 10
GO:0006269 DNA replication, synthesis of RNA primer 10
GO:0006342 chromatin silencing 4
GO:0006346 DNA methylation-dependent heterochromatin assembly 2
GO:0006348 chromatin silencing at telomere 2
GO:0006351 transcription, DNA-templated 2
GO:0006352 DNA-templated transcription, initiation 12
GO:0006353 DNA-templated transcription, termination 44
GO:0006354 DNA-templated transcription, elongation 4
GO:0006355 regulation of transcription, DNA-templated 18
GO:0006357 regulation of transcription by RNA polymerase II 34
GO:0006360 transcription by RNA polymerase I 8
GO:0006367 transcription initiation from RNA polymerase II promoter 4
GO:0006369 termination of RNA polymerase II transcription 12
GO:0006383 transcription by RNA polymerase III 2
GO:0006384 transcription initiation from RNA polymerase III promoter 4
GO:0009299 mRNA transcription 2
GO:0016480 negative regulation of transcription by RNA polymerase III 4
GO:0031508 pericentric heterochromatin assembly 6
GO:0031936 negative regulation of chromatin silencing 2
GO:0031937 positive regulation of chromatin silencing 2
GO:0032784 regulation of DNA-templated transcription, elongation 12
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 12
GO:0042794 plastid rRNA transcription 2
GO:0043433 negative regulation of DNA-binding transcription factor activity 4
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 2
GO:0045014 carbon catabolite repression of transcription by glucose 4
GO:0045892 negative regulation of transcription, DNA-templated 8
GO:0045893 positive regulation of transcription, DNA-templated 8
GO:0045944 positive regulation of transcription by RNA polymerase II 14
GO:0051091 positive regulation of DNA-binding transcription factor activity 6
GO:0051123 RNA polymerase II preinitiation complex assembly 4
GO:0060195 negative regulation of antisense RNA transcription 2
GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter 6
GO:0060567 negative regulation of DNA-templated transcription, termination 2
GO:0070897 transcription preinitiation complex assembly 12
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 6
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain 10
GO:0097659 nucleic acid-templated transcription 2
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain 2
GO:2000143 negative regulation of DNA-templated transcription, initiation 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001