Functional clusters

Information

  • Type Gene Ontology
  • Description lipid metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Allium sativum chr4 3 CH_asa_514 6 7 0.0000672764
Allium sativum chr4 3 CH_asa_577 12 51 0.000121188
Allium sativum chr8 3 CH_asa_580 9 24 0.000126411
Arabidopsis thaliana Chr5 3 CH_ath_490 11 49 0.0000968278
Ceratophyllum demersum 3 3 CH_cde_74 11 26 0.0000082749
Cenchrus purpureus GWHAORA00000001 3 CH_cpu_374 17 61 0.00000124154
Cenchrus purpureus GWHAORA00000001 3 CH_cpu_690 6 6 0.000114645
Cenchrus purpureus GWHAORA00000008 3 CH_cpu_931 6 7 0.000778607
Digitaria exilis Dexi_CM05836_chr06B 3 CH_dex_421 6 6 0.00004096
Magnolia biondii Chr02 3 CH_mbi_524 10 37 0.00016573
Oryza alta GWHAZTO00000022 3 CH_oal_233 8 12 0.000000289633
Populus trichocarpa Chr19 3 CH_ptr_221 15 40 0.000000227489
Sequoiadendron giganteum chr5 3 CH_sgi_1191 6 7 0.000286467
Sequoiadendron giganteum chr1 3 CH_sgi_748 10 18 0.0000014601
Sequoiadendron giganteum chr4 3 CH_sgi_935 7 9 0.0000453384
Solanum lycopersicum SL4.0ch04 3 CH_sly_568 5 5 0.000933393
Allium sativum chr4 4 CH_asa_514 6 7 0.0000672764
Allium sativum chr4 4 CH_asa_577 12 51 0.000121188
Allium sativum chr8 4 CH_asa_580 9 24 0.000126411
Arabidopsis thaliana Chr5 4 CH_ath_490 11 49 0.0000968278
Ceratophyllum demersum 3 4 CH_cde_74 11 26 0.0000082749
Cenchrus purpureus GWHAORA00000001 4 CH_cpu_374 17 61 0.00000124154
Cenchrus purpureus GWHAORA00000001 4 CH_cpu_690 6 6 0.000114645
Cenchrus purpureus GWHAORA00000008 4 CH_cpu_931 6 7 0.000778607
Digitaria exilis Dexi_CM05836_chr06B 4 CH_dex_421 6 6 0.00004096
Magnolia biondii Chr02 4 CH_mbi_524 10 37 0.00016573
Oryza alta GWHAZTO00000022 4 CH_oal_233 8 12 0.000000289633
Populus trichocarpa Chr19 4 CH_ptr_221 15 40 0.000000227489
Sequoiadendron giganteum chr5 4 CH_sgi_1191 6 7 0.000286467
Sequoiadendron giganteum chr1 4 CH_sgi_748 10 18 0.0000014601
Sequoiadendron giganteum chr4 4 CH_sgi_935 7 9 0.0000453384
Solanum lycopersicum SL4.0ch04 4 CH_sly_568 5 5 0.000933393

Available child term results

Ontology identifier Description Number of clusters
GO:0001561 fatty acid alpha-oxidation 8
GO:0001676 long-chain fatty acid metabolic process 2
GO:0006488 dolichol-linked oligosaccharide biosynthetic process 2
GO:0006490 oligosaccharide-lipid intermediate biosynthetic process 2
GO:0006506 GPI anchor biosynthetic process 4
GO:0006633 fatty acid biosynthetic process 68
GO:0006635 fatty acid beta-oxidation 2
GO:0006636 unsaturated fatty acid biosynthetic process 2
GO:0006639 acylglycerol metabolic process 2
GO:0006650 glycerophospholipid metabolic process 2
GO:0006651 diacylglycerol biosynthetic process 8
GO:0006654 phosphatidic acid biosynthetic process 2
GO:0006661 phosphatidylinositol biosynthetic process 4
GO:0006671 phytosphingosine metabolic process 4
GO:0006680 glucosylceramide catabolic process 2
GO:0006694 steroid biosynthetic process 4
GO:0006715 farnesol biosynthetic process 2
GO:0006720 isoprenoid metabolic process 2
GO:0006721 terpenoid metabolic process 6
GO:0006722 triterpenoid metabolic process 10
GO:0008299 isoprenoid biosynthetic process 6
GO:0008610 lipid biosynthetic process 4
GO:0008654 phospholipid biosynthetic process 2
GO:0009395 phospholipid catabolic process 4
GO:0009685 gibberellin metabolic process 12
GO:0009686 gibberellin biosynthetic process 8
GO:0009688 abscisic acid biosynthetic process 6
GO:0010116 positive regulation of abscisic acid biosynthetic process 8
GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway 2
GO:0010241 ent-kaurene oxidation to kaurenoic acid 44
GO:0010323 negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway 2
GO:0010371 regulation of gibberellin biosynthetic process 8
GO:0010373 negative regulation of gibberellin biosynthetic process 2
GO:0010422 regulation of brassinosteroid biosynthetic process 12
GO:0010423 negative regulation of brassinosteroid biosynthetic process 2
GO:0010430 fatty acid omega-oxidation 4
GO:0010513 positive regulation of phosphatidylinositol biosynthetic process 2
GO:0010597 green leaf volatile biosynthetic process 2
GO:0010896 regulation of triglyceride catabolic process 4
GO:0016042 lipid catabolic process 10
GO:0016101 diterpenoid metabolic process 4
GO:0016102 diterpenoid biosynthetic process 44
GO:0016104 triterpenoid biosynthetic process 2
GO:0016106 sesquiterpenoid biosynthetic process 2
GO:0016114 terpenoid biosynthetic process 8
GO:0016121 carotene catabolic process 2
GO:0016124 xanthophyll catabolic process 12
GO:0016126 sterol biosynthetic process 2
GO:0016127 sterol catabolic process 2
GO:0016131 brassinosteroid metabolic process 2
GO:0016255 attachment of GPI anchor to protein 4
GO:0019216 regulation of lipid metabolic process 4
GO:0019218 regulation of steroid metabolic process 4
GO:0019374 galactolipid metabolic process 2
GO:0019408 dolichol biosynthetic process 2
GO:0019432 triglyceride biosynthetic process 2
GO:0019433 triglyceride catabolic process 4
GO:0019605 butyrate metabolic process 2
GO:0019745 pentacyclic triterpenoid biosynthetic process 2
GO:0032000 positive regulation of fatty acid beta-oxidation 2
GO:0032049 cardiolipin biosynthetic process 2
GO:0033306 phytol metabolic process 38
GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase 2
GO:0033542 fatty acid beta-oxidation, unsaturated, even number 14
GO:0034434 sterol esterification 16
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process 2
GO:0042758 long-chain fatty acid catabolic process 8
GO:0042759 long-chain fatty acid biosynthetic process 8
GO:0042761 very long-chain fatty acid biosynthetic process 6
GO:0044242 cellular lipid catabolic process 2
GO:0044255 cellular lipid metabolic process 6
GO:0045339 farnesyl diphosphate catabolic process 8
GO:0045487 gibberellin catabolic process 2
GO:0045717 negative regulation of fatty acid biosynthetic process 2
GO:0045723 positive regulation of fatty acid biosynthetic process 16
GO:0045828 positive regulation of isoprenoid metabolic process 2
GO:0046340 diacylglycerol catabolic process 2
GO:0046345 abscisic acid catabolic process 8
GO:0046459 short-chain fatty acid metabolic process 12
GO:0046466 membrane lipid catabolic process 2
GO:0046473 phosphatidic acid metabolic process 4
GO:0046512 sphingosine biosynthetic process 18
GO:0046514 ceramide catabolic process 4
GO:0046520 sphingoid biosynthetic process 18
GO:0046856 phosphatidylinositol dephosphorylation 4
GO:0051762 sesquiterpene biosynthetic process 6
GO:0051791 medium-chain fatty acid metabolic process 4
GO:0052889 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene 2
GO:0080003 thalianol metabolic process 2
GO:0080065 4-alpha-methyl-delta7-sterol oxidation 4
GO:0090153 regulation of sphingolipid biosynthetic process 4
GO:0090359 negative regulation of abscisic acid biosynthetic process 10
GO:0106118 regulation of sterol biosynthetic process 2
GO:1900486 positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway 2
GO:1901601 strigolactone biosynthetic process 8
GO:1901811 beta-carotene catabolic process 6
GO:1902609 (R)-2-hydroxy-alpha-linolenic acid biosynthetic process 2
GO:1903175 fatty alcohol biosynthetic process 6
GO:1903509 liposaccharide metabolic process 4
GO:1903730 regulation of phosphatidate phosphatase activity 2
GO:1904143 positive regulation of carotenoid biosynthetic process 2
GO:1904964 positive regulation of phytol biosynthetic process 2
GO:1905038 regulation of membrane lipid metabolic process 2
GO:2001280 positive regulation of unsaturated fatty acid biosynthetic process 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001