Functional clusters

Information

  • Type Gene Ontology
  • Description L-alanine catabolic process, by transamination

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Lolium perenne Lp_chr1_0 3 CH_lpe_300 2 2 0.0000964274
Oryza alta GWHAZTO00000022 3 CH_oal_680 2 2 0.000423178
Oryza brachyantha 10 3 CH_obr_272 2 2 0.000358402
Oryza sativa Kitaake Chr10 3 CH_osak_341 2 2 0.000168857
Oryza sativa ssp. japonica chr10 3 CH_osa_409 2 3 0.000475289
Oropetium thomaeum Chromosome_1 3 CH_oth_158 2 2 0.000213554
Phyllostachys edulis hic_scaffold_4 3 CH_ped_425 2 2 0.000407456
Phyllostachys edulis hic_scaffold_13 3 CH_ped_426 2 2 0.000407456
Panicum hallii Chr09 3 CH_pha_301 2 2 0.000174332
Sorghum bicolor Chr01 3 CH_sbi_325 2 2 0.000176005
Setaria italica scaffold_9 3 CH_sit_282 2 2 0.0000580434
Saccharum spontaneum Chr1D 3 CH_ssp_130 4 7 0.000000000470511
Saccharum spontaneum Chr1A 3 CH_ssp_338 3 5 0.00000140867
Setaria viridis Chr_09 3 CH_svi_359 2 2 0.000156535
Zea mays B73 5 3 CH_zma_266 2 2 0.000306788
Lolium perenne Lp_chr1_0 4 CH_lpe_300 2 2 0.0000964274
Oryza alta GWHAZTO00000022 4 CH_oal_680 2 2 0.000423178
Oryza brachyantha 10 4 CH_obr_272 2 2 0.000358402
Oryza sativa Kitaake Chr10 4 CH_osak_341 2 2 0.000168857
Oryza sativa ssp. japonica chr10 4 CH_osa_409 2 3 0.000475289
Oropetium thomaeum Chromosome_1 4 CH_oth_158 2 2 0.000213554
Phyllostachys edulis hic_scaffold_4 4 CH_ped_425 2 2 0.000407456
Phyllostachys edulis hic_scaffold_13 4 CH_ped_426 2 2 0.000407456
Panicum hallii Chr09 4 CH_pha_301 2 2 0.000174332
Sorghum bicolor Chr01 4 CH_sbi_325 2 2 0.000176005
Setaria italica scaffold_9 4 CH_sit_282 2 2 0.0000580434
Saccharum spontaneum Chr1D 4 CH_ssp_130 4 7 0.000000000470511
Saccharum spontaneum Chr1A 4 CH_ssp_338 3 5 0.00000140867
Setaria viridis Chr_09 4 CH_svi_359 2 2 0.000156535
Zea mays B73 5 4 CH_zma_266 2 2 0.000306788

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001