Functional clusters
Information
- Type Gene Ontology
- Description nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Sequoiadendron giganteum | chr2 | 3 | CH_sgi_184 | 6 | 6 | 6.23306e-16 |
| Sequoiadendron giganteum | chr7 | 3 | CH_sgi_829 | 3 | 3 | 0.00000630447 |
| Sequoiadendron giganteum | chr2 | 4 | CH_sgi_184 | 6 | 6 | 6.23306e-16 |
| Sequoiadendron giganteum | chr7 | 4 | CH_sgi_829 | 3 | 3 | 0.00000630447 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0070478 | nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay | 4 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |