Functional clusters
Information
- Type Gene Ontology
- Description DNA integration
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Chara braunii | BFEA01000010 | 3 | CH_cbr_148 | 23 | 80 | 0.000257128 |
| Chara braunii | BFEA01000313 | 3 | CH_cbr_189 | 9 | 13 | 0.000973811 |
| Chara braunii | BFEA01000045 | 3 | CH_cbr_88 | 24 | 79 | 0.0000358619 |
| Dioscorea dumetorum | contig1 | 3 | CH_ddu_175 | 12 | 72 | 0.000173302 |
| Lolium perenne | Lp_chr3_0 | 3 | CH_lpe_11 | 30 | 56 | 3.51817e-20 |
| Lolium perenne | Lp_chr3_0 | 3 | CH_lpe_12 | 29 | 52 | 4.50129e-20 |
| Lolium perenne | Lp_chr4_0 | 3 | CH_lpe_14 | 30 | 57 | 7.08342e-20 |
| Lolium perenne | Lp_chr1_0 | 3 | CH_lpe_16 | 30 | 63 | 3.26993e-18 |
| Lolium perenne | Lp_chr3_0 | 3 | CH_lpe_165 | 22 | 77 | 0.000000502587 |
| Lolium perenne | Lp_chr2_0 | 3 | CH_lpe_17 | 26 | 46 | 7.51943e-18 |
| Lolium perenne | Lp_chr3_0 | 3 | CH_lpe_437 | 18 | 75 | 0.000830025 |
| Lolium perenne | Lp_chr3_0 | 3 | CH_lpe_6 | 30 | 49 | 1.39059e-22 |
| Oryza alta | GWHAZTO00000006 | 3 | CH_oal_441 | 6 | 42 | 0.0000554181 |
| Oryza sativa ssp. indica | Chr3 | 3 | CH_osaindica_214 | 9 | 76 | 0.0000176519 |
| Physcomitrium patens | scaffold_70 | 3 | CH_ppa_124 | 3 | 3 | 0.000173771 |
| Zostera marina | Chr02 | 3 | CH_zosmarina_139 | 6 | 22 | 0.000360914 |
| Zostera marina | Chr02 | 3 | CH_zosmarina_47 | 11 | 75 | 0.000000463988 |
| Zostera marina | Chr02 | 3 | CH_zosmarina_48 | 11 | 75 | 0.000000463988 |
| Zostera marina | Chr03 | 3 | CH_zosmarina_73 | 10 | 77 | 0.0000133473 |
| Chara braunii | BFEA01000010 | 4 | CH_cbr_148 | 23 | 80 | 0.000257128 |
| Chara braunii | BFEA01000313 | 4 | CH_cbr_189 | 9 | 13 | 0.000973811 |
| Chara braunii | BFEA01000045 | 4 | CH_cbr_88 | 24 | 79 | 0.0000358619 |
| Dioscorea dumetorum | contig1 | 4 | CH_ddu_175 | 12 | 72 | 0.000173302 |
| Lolium perenne | Lp_chr3_0 | 4 | CH_lpe_11 | 30 | 56 | 3.51817e-20 |
| Lolium perenne | Lp_chr3_0 | 4 | CH_lpe_12 | 29 | 52 | 4.50129e-20 |
| Lolium perenne | Lp_chr4_0 | 4 | CH_lpe_14 | 30 | 57 | 7.08342e-20 |
| Lolium perenne | Lp_chr1_0 | 4 | CH_lpe_16 | 30 | 63 | 3.26993e-18 |
| Lolium perenne | Lp_chr3_0 | 4 | CH_lpe_165 | 22 | 77 | 0.000000502587 |
| Lolium perenne | Lp_chr2_0 | 4 | CH_lpe_17 | 26 | 46 | 7.51943e-18 |
| Lolium perenne | Lp_chr3_0 | 4 | CH_lpe_437 | 18 | 75 | 0.000830025 |
| Lolium perenne | Lp_chr3_0 | 4 | CH_lpe_6 | 30 | 49 | 1.39059e-22 |
| Oryza alta | GWHAZTO00000006 | 4 | CH_oal_441 | 6 | 42 | 0.0000554181 |
| Oryza sativa ssp. indica | Chr3 | 4 | CH_osaindica_214 | 9 | 76 | 0.0000176519 |
| Physcomitrium patens | scaffold_70 | 4 | CH_ppa_124 | 3 | 3 | 0.000173771 |
| Zostera marina | Chr02 | 4 | CH_zosmarina_139 | 6 | 22 | 0.000360914 |
| Zostera marina | Chr02 | 4 | CH_zosmarina_47 | 11 | 75 | 0.000000463988 |
| Zostera marina | Chr02 | 4 | CH_zosmarina_48 | 11 | 75 | 0.000000463988 |
| Zostera marina | Chr03 | 4 | CH_zosmarina_73 | 10 | 77 | 0.0000133473 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |