Functional clusters

Information

  • Type Gene Ontology
  • Description regulation of double-strand break repair via homologous recombination

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Asparagus officinalis AsparagusV1_07 3 CH_aof_132 2 2 0.000453549
Amborella trichopoda AmTr_v1.0_scaffold00012 3 CH_atr_69 4 9 0.00000000284145
Cenchrus purpureus GWHAORA00000009 3 CH_cpu_97 6 26 0.000000000000134903
Digitaria exilis Dexi_CM05836_chr05A 3 CH_dex_380 3 11 0.0000154708
Digitaria exilis Dexi_CM05836_chr05B 3 CH_dex_397 3 13 0.0000268118
Eragrostis curvula Contig25 3 CH_ecu_111 6 22 0.0000000000000678622
Magnolia biondii Chr05 3 CH_mbi_177 3 3 0.0000000353808
Oryza sativa ssp. indica Chr1 3 CH_osaindica_161 3 6 0.00000160095
Oropetium thomaeum Chromosome_3 3 CH_oth_190 2 2 0.000427107
Phyllostachys edulis hic_scaffold_16 3 CH_ped_507 2 2 0.000855659
Panicum hallii Chr05 3 CH_pha_399 2 2 0.000581108
Physcomitrium patens Chr21 3 CH_ppa_55 3 6 0.000002252
Setaria italica scaffold_5 3 CH_sit_205 3 6 0.00000202091
Saccharum spontaneum Chr3B 3 CH_ssp_432 3 7 0.00000657248
Setaria viridis Chr_05 3 CH_svi_222 3 8 0.00000228629
Asparagus officinalis AsparagusV1_07 4 CH_aof_132 2 2 0.000453549
Amborella trichopoda AmTr_v1.0_scaffold00012 4 CH_atr_69 4 9 0.00000000284145
Cenchrus purpureus GWHAORA00000009 4 CH_cpu_97 6 26 0.000000000000134903
Digitaria exilis Dexi_CM05836_chr05A 4 CH_dex_380 3 11 0.0000154708
Digitaria exilis Dexi_CM05836_chr05B 4 CH_dex_397 3 13 0.0000268118
Eragrostis curvula Contig25 4 CH_ecu_111 6 22 0.0000000000000678622
Magnolia biondii Chr05 4 CH_mbi_177 3 3 0.0000000353808
Oryza sativa ssp. indica Chr1 4 CH_osaindica_161 3 6 0.00000160095
Oropetium thomaeum Chromosome_3 4 CH_oth_190 2 2 0.000427107
Phyllostachys edulis hic_scaffold_16 4 CH_ped_507 2 2 0.000855659
Panicum hallii Chr05 4 CH_pha_399 2 2 0.000581108
Physcomitrium patens Chr21 4 CH_ppa_55 3 6 0.000002252
Setaria italica scaffold_5 4 CH_sit_205 3 6 0.00000202091
Saccharum spontaneum Chr3B 4 CH_ssp_432 3 7 0.00000657248
Setaria viridis Chr_05 4 CH_svi_222 3 8 0.00000228629

Available child term results

Ontology identifier Description Number of clusters
GO:1905168 positive regulation of double-strand break repair via homologous recombination 2
GO:2000042 negative regulation of double-strand break repair via homologous recombination 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001