Functional clusters
Information
- Type Gene Ontology
- Description ubiquitin-dependent protein catabolic process
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_344 | 3 | CH_aag_154 | 5 | 15 | 0.000459706 |
| Aegilops tauschii | 3D | 3 | CH_ata_360 | 4 | 6 | 0.000433826 |
| Aegilops tauschii | 6D | 3 | CH_ata_365 | 5 | 12 | 0.000448097 |
| Brachypodium distachyon | Bd2 | 3 | CH_bdi_37 | 10 | 20 | 0.000000000000904781 |
| Calamus simplicifolius | scaffold1152 | 3 | CH_calsi_4 | 12 | 21 | 7.59727e-17 |
| Calamus simplicifolius | scaffold329 | 3 | CH_calsi_85 | 5 | 5 | 0.000000459628 |
| Cenchrus purpureus | GWHAORA00000008 | 3 | CH_cpu_226 | 8 | 15 | 0.00000000447984 |
| Cenchrus purpureus | GWHAORA00000001 | 3 | CH_cpu_39 | 14 | 21 | 1.44441e-20 |
| Cenchrus purpureus | GWHAORA00000007 | 3 | CH_cpu_67 | 13 | 28 | 5.89167e-16 |
| Digitaria exilis | Dexi_CM05836_chr03B | 3 | CH_dex_41 | 12 | 22 | 5.21324e-17 |
| Digitaria exilis | Dexi_CM05836_chr05A | 3 | CH_dex_45 | 13 | 34 | 4.01027e-16 |
| Digitaria exilis | Dexi_CM05836_chr03A | 3 | CH_dex_67 | 10 | 17 | 0.0000000000000489174 |
| Digitaria exilis | Dexi_CM05836_chr05B | 3 | CH_dex_76 | 11 | 29 | 0.000000000000469373 |
| Eragrostis curvula | 7 | 3 | CH_ecu_50 | 20 | 79 | 1.56344e-21 |
| Eragrostis curvula | 5 | 3 | CH_ecu_645 | 4 | 4 | 0.0000990967 |
| Eragrostis curvula | Contig25 | 3 | CH_ecu_8 | 25 | 41 | 7.36175e-40 |
| Hordeum vulgare | chrUn | 3 | CH_hvu_73 | 8 | 13 | 0.0000000000480867 |
| Lolium perenne | Lp_chr1_0 | 3 | CH_lpe_242 | 6 | 23 | 0.0000183812 |
| Lolium perenne | Lp_chr3_0 | 3 | CH_lpe_248 | 8 | 73 | 0.0000293324 |
| Lolium perenne | Lp_chr5_0 | 3 | CH_lpe_392 | 4 | 7 | 0.00046579 |
| Lolium perenne | Lp_chr5_0 | 3 | CH_lpe_61 | 8 | 18 | 0.000000000114695 |
| Miscanthus sinensis | Chr06 | 3 | CH_msi_13 | 15 | 27 | 4.62417e-22 |
| Miscanthus sinensis | Chr05 | 3 | CH_msi_87 | 10 | 33 | 0.000000000322197 |
| Oryza alta | GWHAZTO00000006 | 3 | CH_oal_163 | 6 | 8 | 0.0000000132211 |
| Oryza alta | GWHAZTO00000012 | 3 | CH_oal_262 | 5 | 6 | 0.00000069675 |
| Oryza alta | GWHAZTO00000019 | 3 | CH_oal_381 | 5 | 9 | 0.0000144826 |
| Oryza alta | GWHAZTO00000007 | 3 | CH_oal_415 | 4 | 4 | 0.0000284837 |
| Oryza brachyantha | 7 | 3 | CH_obr_16 | 9 | 11 | 0.000000000000108826 |
| Oryza sativa Kitaake | Chr7 | 3 | CH_osak_122 | 6 | 6 | 0.00000000238395 |
| Oryza sativa Kitaake | Chr1 | 3 | CH_osak_455 | 4 | 6 | 0.000886546 |
| Oryza sativa Kitaake | Chr1 | 3 | CH_osak_76 | 10 | 26 | 0.0000000000174805 |
| Panicum hallii | Chr05 | 3 | CH_pha_132 | 7 | 17 | 0.000000206646 |
| Panicum hallii | Chr03 | 3 | CH_pha_185 | 10 | 80 | 0.00000270652 |
| Panicum hallii | Chr02 | 3 | CH_pha_241 | 4 | 4 | 0.0000500185 |
| Sorghum bicolor | Chr09 | 3 | CH_sbi_122 | 10 | 50 | 0.0000000356299 |
| Sorghum bicolor | Chr03 | 3 | CH_sbi_7 | 19 | 40 | 6.79244e-27 |
| Secale cereale | GWHASIY00000006 | 3 | CH_sce_439 | 5 | 7 | 0.0000292334 |
| Secale cereale | GWHASIY00000003 | 3 | CH_sce_446 | 10 | 78 | 0.0000327093 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_300 | 7 | 8 | 0.00000000000357858 |
| Sequoiadendron giganteum | chr5 | 3 | CH_sgi_908 | 5 | 12 | 0.0000251959 |
| Setaria italica | scaffold_5 | 3 | CH_sit_100 | 8 | 17 | 0.000000000707608 |
| Saccharum spontaneum | Chr7D | 3 | CH_ssp_1084 | 8 | 63 | 0.000750258 |
| Saccharum spontaneum | Chr3B | 3 | CH_ssp_127 | 8 | 13 | 0.000000000332271 |
| Saccharum spontaneum | Chr3A | 3 | CH_ssp_375 | 6 | 11 | 0.00000286064 |
| Saccharum spontaneum | Chr3D | 3 | CH_ssp_511 | 5 | 7 | 0.0000204164 |
| Saccharum spontaneum | Chr7A | 3 | CH_ssp_566 | 7 | 28 | 0.0000432719 |
| Setaria viridis | Chr_05 | 3 | CH_svi_400 | 5 | 14 | 0.000307379 |
| Triticum aestivum | Chr3B | 3 | CH_tae_206 | 13 | 45 | 0.000000000000455295 |
| Triticum aestivum | Chr3D | 3 | CH_tae_632 | 7 | 15 | 0.000000471429 |
| Triticum aestivum | Chr6D | 3 | CH_tae_729 | 5 | 6 | 0.00000164179 |
| Triticum aestivum | Chr6A | 3 | CH_tae_791 | 6 | 11 | 0.0000050428 |
| Triticum aestivum | Chr6D | 3 | CH_tae_946 | 6 | 14 | 0.0000322048 |
| Triticum dicoccoides | 3B | 3 | CH_tdi_327 | 7 | 24 | 0.0000114183 |
| Triticum dicoccoides | 6A | 3 | CH_tdi_506 | 5 | 10 | 0.000207647 |
| Triticum dicoccoides | 3A | 3 | CH_tdi_83 | 10 | 23 | 0.0000000000106616 |
| Triticum turgidum | chr6A | 3 | CH_ttu_399 | 6 | 12 | 0.00000982352 |
| Triticum turgidum | chr3B | 3 | CH_ttu_91 | 11 | 28 | 0.00000000000461894 |
| Anthoceros agrestis | Sc2ySwM_344 | 4 | CH_aag_154 | 5 | 15 | 0.000459706 |
| Aegilops tauschii | 3D | 4 | CH_ata_360 | 4 | 6 | 0.000433826 |
| Aegilops tauschii | 6D | 4 | CH_ata_365 | 5 | 12 | 0.000448097 |
| Brachypodium distachyon | Bd2 | 4 | CH_bdi_37 | 10 | 20 | 0.000000000000904781 |
| Calamus simplicifolius | scaffold1152 | 4 | CH_calsi_4 | 12 | 21 | 7.59727e-17 |
| Calamus simplicifolius | scaffold329 | 4 | CH_calsi_85 | 5 | 5 | 0.000000459628 |
| Cenchrus purpureus | GWHAORA00000008 | 4 | CH_cpu_226 | 8 | 15 | 0.00000000447984 |
| Cenchrus purpureus | GWHAORA00000001 | 4 | CH_cpu_39 | 14 | 21 | 1.44441e-20 |
| Cenchrus purpureus | GWHAORA00000007 | 4 | CH_cpu_67 | 13 | 28 | 5.89167e-16 |
| Digitaria exilis | Dexi_CM05836_chr03B | 4 | CH_dex_41 | 12 | 22 | 5.21324e-17 |
| Digitaria exilis | Dexi_CM05836_chr05A | 4 | CH_dex_45 | 13 | 34 | 4.01027e-16 |
| Digitaria exilis | Dexi_CM05836_chr03A | 4 | CH_dex_67 | 10 | 17 | 0.0000000000000489174 |
| Digitaria exilis | Dexi_CM05836_chr05B | 4 | CH_dex_76 | 11 | 29 | 0.000000000000469373 |
| Eragrostis curvula | 7 | 4 | CH_ecu_50 | 20 | 79 | 1.56344e-21 |
| Eragrostis curvula | 5 | 4 | CH_ecu_645 | 4 | 4 | 0.0000990967 |
| Eragrostis curvula | Contig25 | 4 | CH_ecu_8 | 25 | 41 | 7.36175e-40 |
| Hordeum vulgare | chrUn | 4 | CH_hvu_73 | 8 | 13 | 0.0000000000480867 |
| Lolium perenne | Lp_chr1_0 | 4 | CH_lpe_242 | 6 | 23 | 0.0000183812 |
| Lolium perenne | Lp_chr3_0 | 4 | CH_lpe_248 | 8 | 73 | 0.0000293324 |
| Lolium perenne | Lp_chr5_0 | 4 | CH_lpe_392 | 4 | 7 | 0.00046579 |
| Lolium perenne | Lp_chr5_0 | 4 | CH_lpe_61 | 8 | 18 | 0.000000000114695 |
| Miscanthus sinensis | Chr06 | 4 | CH_msi_13 | 15 | 27 | 4.62417e-22 |
| Miscanthus sinensis | Chr05 | 4 | CH_msi_87 | 10 | 33 | 0.000000000322197 |
| Oryza alta | GWHAZTO00000006 | 4 | CH_oal_163 | 6 | 8 | 0.0000000132211 |
| Oryza alta | GWHAZTO00000012 | 4 | CH_oal_262 | 5 | 6 | 0.00000069675 |
| Oryza alta | GWHAZTO00000019 | 4 | CH_oal_381 | 5 | 9 | 0.0000144826 |
| Oryza alta | GWHAZTO00000007 | 4 | CH_oal_415 | 4 | 4 | 0.0000284837 |
| Oryza brachyantha | 7 | 4 | CH_obr_16 | 9 | 11 | 0.000000000000108826 |
| Oryza sativa Kitaake | Chr7 | 4 | CH_osak_122 | 6 | 6 | 0.00000000238395 |
| Oryza sativa Kitaake | Chr1 | 4 | CH_osak_455 | 4 | 6 | 0.000886546 |
| Oryza sativa Kitaake | Chr1 | 4 | CH_osak_76 | 10 | 26 | 0.0000000000174805 |
| Panicum hallii | Chr05 | 4 | CH_pha_132 | 7 | 17 | 0.000000206646 |
| Panicum hallii | Chr03 | 4 | CH_pha_185 | 10 | 80 | 0.00000270652 |
| Panicum hallii | Chr02 | 4 | CH_pha_241 | 4 | 4 | 0.0000500185 |
| Sorghum bicolor | Chr09 | 4 | CH_sbi_122 | 10 | 50 | 0.0000000356299 |
| Sorghum bicolor | Chr03 | 4 | CH_sbi_7 | 19 | 40 | 6.79244e-27 |
| Secale cereale | GWHASIY00000006 | 4 | CH_sce_439 | 5 | 7 | 0.0000292334 |
| Secale cereale | GWHASIY00000003 | 4 | CH_sce_446 | 10 | 78 | 0.0000327093 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_300 | 7 | 8 | 0.00000000000357858 |
| Sequoiadendron giganteum | chr5 | 4 | CH_sgi_908 | 5 | 12 | 0.0000251959 |
| Setaria italica | scaffold_5 | 4 | CH_sit_100 | 8 | 17 | 0.000000000707608 |
| Saccharum spontaneum | Chr7D | 4 | CH_ssp_1084 | 8 | 63 | 0.000750258 |
| Saccharum spontaneum | Chr3B | 4 | CH_ssp_127 | 8 | 13 | 0.000000000332271 |
| Saccharum spontaneum | Chr3A | 4 | CH_ssp_375 | 6 | 11 | 0.00000286064 |
| Saccharum spontaneum | Chr3D | 4 | CH_ssp_511 | 5 | 7 | 0.0000204164 |
| Saccharum spontaneum | Chr7A | 4 | CH_ssp_566 | 7 | 28 | 0.0000432719 |
| Setaria viridis | Chr_05 | 4 | CH_svi_400 | 5 | 14 | 0.000307379 |
| Triticum aestivum | Chr3B | 4 | CH_tae_206 | 13 | 45 | 0.000000000000455295 |
| Triticum aestivum | Chr3D | 4 | CH_tae_632 | 7 | 15 | 0.000000471429 |
| Triticum aestivum | Chr6D | 4 | CH_tae_729 | 5 | 6 | 0.00000164179 |
| Triticum aestivum | Chr6A | 4 | CH_tae_791 | 6 | 11 | 0.0000050428 |
| Triticum aestivum | Chr6D | 4 | CH_tae_946 | 6 | 14 | 0.0000322048 |
| Triticum dicoccoides | 3B | 4 | CH_tdi_327 | 7 | 24 | 0.0000114183 |
| Triticum dicoccoides | 6A | 4 | CH_tdi_506 | 5 | 10 | 0.000207647 |
| Triticum dicoccoides | 3A | 4 | CH_tdi_83 | 10 | 23 | 0.0000000000106616 |
| Triticum turgidum | chr6A | 4 | CH_ttu_399 | 6 | 12 | 0.00000982352 |
| Triticum turgidum | chr3B | 4 | CH_ttu_91 | 11 | 28 | 0.00000000000461894 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0030433 | ubiquitin-dependent ERAD pathway | 2 |
| GO:0031145 | anaphase-promoting complex-dependent catabolic process | 2 |
| GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | 2 |
| GO:0043162 | ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway | 2 |
| GO:0043328 | protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway | 4 |
| GO:0071596 | ubiquitin-dependent protein catabolic process via the N-end rule pathway | 10 |
| GO:0071629 | cytoplasm protein quality control by the ubiquitin-proteasome system | 8 |
| GO:1990116 | ribosome-associated ubiquitin-dependent protein catabolic process | 8 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |