Functional clusters

Information

  • Type Gene Ontology
  • Description regulation of transcription, DNA-templated

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Allium sativum chr2 3 CH_asa_295 10 15 0.00000137248
Amborella trichopoda AmTr_v1.0_scaffold00061 3 CH_atr_241 6 6 0.000171905
Eragrostis curvula 4 3 CH_ecu_676 7 8 0.000118913
Oryza alta GWHAZTO00000019 3 CH_oal_363 9 13 0.00000947578
Sequoiadendron giganteum chr1 3 CH_sgi_1166 7 9 0.000171141
Selaginella moellendorffii scaffold_111 3 CH_smo_184 5 5 0.00084529
Triticum aestivum Chr7D 3 CH_tae_1030 9 12 0.0000760966
Triticum dicoccoides 2B 3 CH_tdi_290 11 17 0.00000513747
Triticum turgidum chr2A 3 CH_ttu_721 7 8 0.000902247
Allium sativum chr2 4 CH_asa_295 10 15 0.00000137248
Amborella trichopoda AmTr_v1.0_scaffold00061 4 CH_atr_241 6 6 0.000171905
Eragrostis curvula 4 4 CH_ecu_676 7 8 0.000118913
Oryza alta GWHAZTO00000019 4 CH_oal_363 9 13 0.00000947578
Sequoiadendron giganteum chr1 4 CH_sgi_1166 7 9 0.000171141
Selaginella moellendorffii scaffold_111 4 CH_smo_184 5 5 0.00084529
Triticum aestivum Chr7D 4 CH_tae_1030 9 12 0.0000760966
Triticum dicoccoides 2B 4 CH_tdi_290 11 17 0.00000513747
Triticum turgidum chr2A 4 CH_ttu_721 7 8 0.000902247

Available child term results

Ontology identifier Description Number of clusters
GO:0000122 negative regulation of transcription by RNA polymerase II 8
GO:0000183 rDNA heterochromatin assembly 2
GO:0006342 chromatin silencing 4
GO:0006346 DNA methylation-dependent heterochromatin assembly 2
GO:0006348 chromatin silencing at telomere 2
GO:0006357 regulation of transcription by RNA polymerase II 34
GO:0016480 negative regulation of transcription by RNA polymerase III 4
GO:0031508 pericentric heterochromatin assembly 6
GO:0031936 negative regulation of chromatin silencing 2
GO:0031937 positive regulation of chromatin silencing 2
GO:0032784 regulation of DNA-templated transcription, elongation 12
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 12
GO:0043433 negative regulation of DNA-binding transcription factor activity 4
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 2
GO:0045014 carbon catabolite repression of transcription by glucose 4
GO:0045892 negative regulation of transcription, DNA-templated 8
GO:0045893 positive regulation of transcription, DNA-templated 8
GO:0045944 positive regulation of transcription by RNA polymerase II 14
GO:0051091 positive regulation of DNA-binding transcription factor activity 6
GO:0060195 negative regulation of antisense RNA transcription 2
GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter 6
GO:0060567 negative regulation of DNA-templated transcription, termination 2
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 6
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain 10
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain 2
GO:2000143 negative regulation of DNA-templated transcription, initiation 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001