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Monocots PLAZA 5.0
Data
Overview
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Gene families
Expansion plot
Gene family finder
Synteny plot
Colinearity
Ks-graphs
WGDotplot
Colinear region finder
Localization
Functional clusters
WGMapping
Pan-Genome
Pan and core families
Synteny scores overview
Synteny score chart
HOT-Region
Other
Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/Interpro description
Gene family
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BLAST page
Program
blastn
blastp
blastx
tblastx
tblastn
Database
PLAZA Protein Sequences
PLAZA Transcript Sequences
Aegilops tauschii Genome Sequence
Allium sativum Genome Sequence
Amborella trichopoda Genome Sequence
Ananas comosus Genome Sequence
Anthoceros agrestis Genome Sequence
Arabidopsis thaliana Genome Sequence
Asparagus officinalis Genome Sequence
Brachypodium distachyon Genome Sequence
Calamus simplicifolius Genome Sequence
Cenchrus purpureus Genome Sequence
Ceratophyllum demersum Genome Sequence
Chara braunii Genome Sequence
Chlamydomonas reinhardtii Genome Sequence
Digitaria exilis Genome Sequence
Dioscorea dumetorum Genome Sequence
Elaeis guineensis Genome Sequence
Eragrostis curvula Genome Sequence
Glycine max Genome Sequence
Hordeum vulgare Genome Sequence
Lolium perenne Genome Sequence
Magnolia biondii Genome Sequence
Marchantia polymorpha Genome Sequence
Micromonas commoda Genome Sequence
Miscanthus sinensis Genome Sequence
Musa acuminata Genome Sequence
Oropetium thomaeum Genome Sequence
Oryza alta Genome Sequence
Oryza brachyantha Genome Sequence
Oryza sativa Kitaake Genome Sequence
Oryza sativa ssp. indica Genome Sequence
Oryza sativa ssp. japonica Genome Sequence
Panicum hallii Genome Sequence
Phyllostachys edulis Genome Sequence
Physcomitrium patens Genome Sequence
Populus trichocarpa Genome Sequence
Prasinoderma coloniale Genome Sequence
Saccharum spontaneum Genome Sequence
Secale cereale Genome Sequence
Selaginella moellendorffii Genome Sequence
Sequoiadendron giganteum Genome Sequence
Setaria italica Genome Sequence
Setaria viridis Genome Sequence
Solanum lycopersicum Genome Sequence
Sorghum bicolor Genome Sequence
Spirodela polyrhiza Genome Sequence
Triticum aestivum Genome Sequence
Triticum dicoccoides Genome Sequence
Triticum turgidum Genome Sequence
Vanilla planifolia Genome Sequence
Zea mays B73 Genome Sequence
Zea mays B104 Genome Sequence
Zostera marina Genome Sequence
Zoysia japonica ssp. nagirizaki Genome Sequence
Enter sequence below in
FASTA
format
Advanced options
Filter low complexity
Expect
1e-10
1e-5
0.001
0.1
1
10
Matrix
PAM30
PAM70
BLOSUM45
BLOSUM62
BLOSUM80
Perform gapped alignment
Query Genetic codes - (T)Blastx only
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacterial (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
Output format
Pairwise
query-anchored showing identities
query-anchored no identities
flat query-anchored, show identities
flat query-anchored, no identities
XML BLAST output
tabular
tabular with comment lines
Text ASN.1
Binary ASN.1
Comma-seperated values
BLAST archive format (ASN.1)
Descriptions
0
1
10
50
100
250
500
Alignments
0
1
10
50
100
250
500