Functional clusters
Information
- Type Gene Ontology
- Description xylan catabolic process
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Asparagus officinalis | AsparagusV1_02 | 3 | CH_aof_47 | 5 | 68 | 0.00000500905 |
| Allium sativum | chr4 | 3 | CH_asa_785 | 3 | 7 | 0.000663762 |
| Amborella trichopoda | AmTr_v1.0_scaffold00068 | 3 | CH_atr_156 | 3 | 3 | 0.00000772476 |
| Amborella trichopoda | AmTr_v1.0_scaffold00007 | 3 | CH_atr_194 | 3 | 5 | 0.0000771725 |
| Amborella trichopoda | AmTr_v1.0_scaffold00045 | 3 | CH_atr_81 | 4 | 5 | 0.000000023003 |
| Elaeis guineensis | EG5.1_Chr2 | 3 | CH_egu_88 | 3 | 3 | 0.00000385016 |
| Musa acuminata | chr03 | 3 | CH_mac_25 | 5 | 5 | 0.000000000000483766 |
| Miscanthus sinensis | Chr10 | 3 | CH_msi_367 | 3 | 7 | 0.0000962982 |
| Oryza alta | GWHAZTO00000023 | 3 | CH_oal_129 | 6 | 58 | 0.00000000220231 |
| Oryza alta | GWHAZTO00000011 | 3 | CH_oal_564 | 4 | 48 | 0.000148806 |
| Oryza sativa ssp. indica | Chr11 | 3 | CH_osaindica_208 | 4 | 32 | 0.0000147933 |
| Oryza sativa Kitaake | Chr11 | 3 | CH_osak_217 | 4 | 19 | 0.00000206785 |
| Sorghum bicolor | Chr05 | 3 | CH_sbi_315 | 3 | 9 | 0.00015761 |
| Sequoiadendron giganteum | chr4 | 3 | CH_sgi_286 | 5 | 5 | 0.00000000000142152 |
| Setaria italica | scaffold_8 | 3 | CH_sit_317 | 3 | 7 | 0.0000803867 |
| Setaria italica | scaffold_8 | 3 | CH_sit_376 | 3 | 10 | 0.000275372 |
| Setaria viridis | Chr_08 | 3 | CH_svi_154 | 4 | 9 | 0.000000127623 |
| Setaria viridis | Chr_08 | 3 | CH_svi_431 | 3 | 11 | 0.000457125 |
| Vanilla planifolia | CM028157.1 | 3 | CH_vpl_142 | 3 | 3 | 0.00000793558 |
| Vanilla planifolia | CM028157.1 | 3 | CH_vpl_86 | 4 | 8 | 0.000000327746 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00004.1 | 3 | CH_zjn_79 | 3 | 4 | 0.0000046014 |
| Asparagus officinalis | AsparagusV1_02 | 4 | CH_aof_47 | 5 | 68 | 0.00000500905 |
| Allium sativum | chr4 | 4 | CH_asa_785 | 3 | 7 | 0.000663762 |
| Amborella trichopoda | AmTr_v1.0_scaffold00068 | 4 | CH_atr_156 | 3 | 3 | 0.00000772476 |
| Amborella trichopoda | AmTr_v1.0_scaffold00007 | 4 | CH_atr_194 | 3 | 5 | 0.0000771725 |
| Amborella trichopoda | AmTr_v1.0_scaffold00045 | 4 | CH_atr_81 | 4 | 5 | 0.000000023003 |
| Elaeis guineensis | EG5.1_Chr2 | 4 | CH_egu_88 | 3 | 3 | 0.00000385016 |
| Musa acuminata | chr03 | 4 | CH_mac_25 | 5 | 5 | 0.000000000000483766 |
| Miscanthus sinensis | Chr10 | 4 | CH_msi_367 | 3 | 7 | 0.0000962982 |
| Oryza alta | GWHAZTO00000023 | 4 | CH_oal_129 | 6 | 58 | 0.00000000220231 |
| Oryza alta | GWHAZTO00000011 | 4 | CH_oal_564 | 4 | 48 | 0.000148806 |
| Oryza sativa ssp. indica | Chr11 | 4 | CH_osaindica_208 | 4 | 32 | 0.0000147933 |
| Oryza sativa Kitaake | Chr11 | 4 | CH_osak_217 | 4 | 19 | 0.00000206785 |
| Sorghum bicolor | Chr05 | 4 | CH_sbi_315 | 3 | 9 | 0.00015761 |
| Sequoiadendron giganteum | chr4 | 4 | CH_sgi_286 | 5 | 5 | 0.00000000000142152 |
| Setaria italica | scaffold_8 | 4 | CH_sit_317 | 3 | 7 | 0.0000803867 |
| Setaria italica | scaffold_8 | 4 | CH_sit_376 | 3 | 10 | 0.000275372 |
| Setaria viridis | Chr_08 | 4 | CH_svi_154 | 4 | 9 | 0.000000127623 |
| Setaria viridis | Chr_08 | 4 | CH_svi_431 | 3 | 11 | 0.000457125 |
| Vanilla planifolia | CM028157.1 | 4 | CH_vpl_142 | 3 | 3 | 0.00000793558 |
| Vanilla planifolia | CM028157.1 | 4 | CH_vpl_86 | 4 | 8 | 0.000000327746 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00004.1 | 4 | CH_zjn_79 | 3 | 4 | 0.0000046014 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |