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Monocots PLAZA 5.0
Data
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Gene families
Expansion plot
Gene family finder
Synteny plot
Colinearity
Ks-graphs
WGDotplot
Colinear region finder
Localization
Functional clusters
WGMapping
Pan-Genome
Pan and core families
Synteny scores overview
Synteny score chart
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Interactive Phylogenetics Module
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Gene
GO/Interpro description
Gene family
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Gene Family Find Tools
Find specific families
Find enriched families
Find Species/Clade-specific Gene Families
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Species Selection
Clades Quick Selection
Clade selection
No clade selected
Triticum (3)
Triticinae (4)
Hordeinae (2)
Triticeae (6)
Pooideae (8)
Oryza_sativa (3)
Oryza (5)
BOP_clade (14)
Setaria (2)
Cenchrinae (3)
Paniceae (5)
Saccharinae (2)
Zea (2)
Andropogoneae (5)
Panicoideae (10)
Chloridoideae (3)
PACMAD_clade (13)
Poaceae (27)
Poales (28)
Arecaceae (2)
Commelinids (31)
Asparagales (3)
Petrosaviidae (35)
Alismatales (2)
Liliopsida (37)
Fabids (2)
Rosids (3)
Pentapetalae (4)
Mesangiospermae (43)
Magnoliopsida (44)
Spermatophyta (45)
Tracheophyta (46)
MossesLiverworts (2)
Bryophyte (3)
Embryophyta (49)
Streptophytina (50)
Chlorophyta (2)
Viridiplantae (53)
Species selection
Ignore all
Exclude all
Include all
Parameters
Minimum gene family size
2
5
10
20
50
100
200
500
500+
Maximum gene family size
2
5
10
20
50
100
200
500
500+
Gene family type
Homologous gene family
Orthologous gene family
Find Species/Clade-enriched Gene Families
Results
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Parameters
Organism(s)
Aegilops tauschii
Allium sativum
Amborella trichopoda
Ananas comosus
Anthoceros agrestis
Arabidopsis thaliana
Asparagus officinalis
Brachypodium distachyon
Calamus simplicifolius
Cenchrus purpureus
Ceratophyllum demersum
Chara braunii
Chlamydomonas reinhardtii
Digitaria exilis
Dioscorea dumetorum
Elaeis guineensis
Eragrostis curvula
Glycine max
Hordeum vulgare
Lolium perenne
Magnolia biondii
Marchantia polymorpha
Micromonas commoda
Miscanthus sinensis
Musa acuminata
Oropetium thomaeum
Oryza alta
Oryza brachyantha
Oryza sativa Kitaake
Oryza sativa ssp. indica
Oryza sativa ssp. japonica
Panicum hallii
Phyllostachys edulis
Physcomitrium patens
Populus trichocarpa
Prasinoderma coloniale
Saccharum spontaneum
Secale cereale
Selaginella moellendorffii
Sequoiadendron giganteum
Setaria italica
Setaria viridis
Solanum lycopersicum
Sorghum bicolor
Spirodela polyrhiza
Triticum aestivum
Triticum dicoccoides
Triticum turgidum
Vanilla planifolia
Zea mays B73
Zea mays B104
Zostera marina
Zoysia japonica ssp. nagirizaki
Minimum expansion ratio of the species within the gene family (compared to proteome set)
2
5
10
20
Minimum gene count of the gene family
2
5
10
20
50
100
200
500
500+
Maximum gene count of the gene family
2
5
10
20
50
100
200
500
500+
Gene family type
Homologous gene family
Orthologous gene family