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Monocots PLAZA 5.0
Data
Overview
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Analyze
Gene families
Expansion plot
Gene family finder
Synteny plot
Colinearity
Ks-graphs
WGDotplot
Colinear region finder
Localization
Functional clusters
WGMapping
Pan-Genome
Pan and core families
Synteny scores overview
Synteny score chart
HOT-Region
Other
Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/Interpro description
Gene family
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API key
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WGDotplot
Tool that reports in a pairwise manner all colinear regions between and/or within species.
JS WGDotplot
Circleplot
Parameters
Organism 1
Organism 2
Comparing
Dating method
mean ks
ks
kn
mean 4dtv
4dtv
Show multiplicons
Canvas rendering
SVG rendering
Draw
Reset
Clear
Build Parameters
Organism
Aegilops tauschii
Allium sativum
Amborella trichopoda
Ananas comosus
Anthoceros agrestis
Arabidopsis thaliana
Asparagus officinalis
Brachypodium distachyon
Calamus simplicifolius
Cenchrus purpureus
Ceratophyllum demersum
Chara braunii
Chlamydomonas reinhardtii
Digitaria exilis
Dioscorea dumetorum
Elaeis guineensis
Eragrostis curvula
Glycine max
Hordeum vulgare
Lolium perenne
Magnolia biondii
Marchantia polymorpha
Micromonas commoda
Miscanthus sinensis
Musa acuminata
Oropetium thomaeum
Oryza alta
Oryza brachyantha
Oryza sativa Kitaake
Oryza sativa ssp. indica
Oryza sativa ssp. japonica
Panicum hallii
Phyllostachys edulis
Physcomitrium patens
Populus trichocarpa
Prasinoderma coloniale
Saccharum spontaneum
Secale cereale
Selaginella moellendorffii
Sequoiadendron giganteum
Setaria italica
Setaria viridis
Solanum lycopersicum
Sorghum bicolor
Spirodela polyrhiza
Triticum aestivum
Triticum dicoccoides
Triticum turgidum
Vanilla planifolia
Zea mays B73
Zea mays B104
Zostera marina
Zoysia japonica ssp. nagirizaki
Comparing
default experiment, lvl2 only, without ks dating
BOP clade, lvl2 only, with ks dating
PACMAD clade, lvl2 only, with ks dating
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