Functional clusters

Information

  • Type Gene Ontology
  • Description negative regulation of transcription, DNA-templated

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Allium sativum chr6 3 CH_asa_668 5 13 0.000275448
Glycine max Gm10 3 CH_gma_151 7 9 0.0000000136659
Solanum lycopersicum SL4.0ch10 3 CH_sly_257 7 27 0.00000591173
Solanum lycopersicum SL4.0ch02 3 CH_sly_501 4 6 0.000583183
Allium sativum chr6 4 CH_asa_668 5 13 0.000275448
Glycine max Gm10 4 CH_gma_151 7 9 0.0000000136659
Solanum lycopersicum SL4.0ch10 4 CH_sly_257 7 27 0.00000591173
Solanum lycopersicum SL4.0ch02 4 CH_sly_501 4 6 0.000583183

Available child term results

Ontology identifier Description Number of clusters
GO:0000122 negative regulation of transcription by RNA polymerase II 8
GO:0000183 rDNA heterochromatin assembly 2
GO:0006342 chromatin silencing 4
GO:0006346 DNA methylation-dependent heterochromatin assembly 2
GO:0006348 chromatin silencing at telomere 2
GO:0016480 negative regulation of transcription by RNA polymerase III 4
GO:0031508 pericentric heterochromatin assembly 6
GO:0031936 negative regulation of chromatin silencing 2
GO:0031937 positive regulation of chromatin silencing 2
GO:0045014 carbon catabolite repression of transcription by glucose 4
GO:0060195 negative regulation of antisense RNA transcription 2
GO:0060567 negative regulation of DNA-templated transcription, termination 2
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 6
GO:2000143 negative regulation of DNA-templated transcription, initiation 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001