Functional clusters

Information

  • Type Gene Ontology
  • Description rRNA processing

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Calamus simplicifolius scaffold242 3 CH_calsi_143 4 5 0.0000208125
Hordeum vulgare chr3H 3 CH_hvu_451 3 3 0.00096868
Magnolia biondii Chr16 3 CH_mbi_706 5 29 0.000892595
Saccharum spontaneum Chr7D 3 CH_ssp_253 7 23 0.000000235297
Calamus simplicifolius scaffold242 4 CH_calsi_143 4 5 0.0000208125
Hordeum vulgare chr3H 4 CH_hvu_451 3 3 0.00096868
Magnolia biondii Chr16 4 CH_mbi_706 5 29 0.000892595
Saccharum spontaneum Chr7D 4 CH_ssp_253 7 23 0.000000235297

Available child term results

Ontology identifier Description Number of clusters
GO:0000154 rRNA modification 12
GO:0000453 enzyme-directed rRNA 2'-O-methylation 2
GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2
GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 12
GO:0000469 cleavage involved in rRNA processing 2
GO:0000476 maturation of 4.5S rRNA 2
GO:0070476 rRNA (guanine-N7)-methylation 2
GO:2000232 regulation of rRNA processing 4
GO:2000234 positive regulation of rRNA processing 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001