Functional clusters

Information

  • Type Gene Ontology
  • Description cellular biosynthetic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR01 3 CH_aox_249 21 39 0.000382012
Camellia sinensis var. sinensis Chr7 3 CH_camsi_771 22 49 0.000548811
Citrus clementina scaffold_9 3 CH_ccl_416 9 9 0.000784311
Rhododendron simsii chr02 3 CH_rsi_468 17 29 0.000403137
Solanum pennellii Spenn-ch05 3 CH_spe_312 19 43 0.0000922431
Solanum tuberosum ST4.03ch05 3 CH_stu_590 26 60 0.000543715
Aquilegia oxysepala CHR01 4 CH_aox_249 21 39 0.000382012
Camellia sinensis var. sinensis Chr7 4 CH_camsi_771 22 49 0.000548811
Citrus clementina scaffold_9 4 CH_ccl_416 9 9 0.000784311
Rhododendron simsii chr02 4 CH_rsi_468 17 29 0.000403137
Solanum pennellii Spenn-ch05 4 CH_spe_312 19 43 0.0000922431
Solanum tuberosum ST4.03ch05 4 CH_stu_590 26 60 0.000543715

Available child term results

Ontology identifier Description Number of clusters
GO:0000024 maltose biosynthetic process 12
GO:0000032 cell wall mannoprotein biosynthetic process 2
GO:0000122 negative regulation of transcription by RNA polymerase II 14
GO:0000162 tryptophan biosynthetic process 2
GO:0000183 rDNA heterochromatin assembly 16
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening 8
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 10
GO:0000731 DNA synthesis involved in DNA repair 4
GO:0001172 transcription, RNA-templated 12
GO:0001188 RNA polymerase I preinitiation complex assembly 8
GO:0001731 formation of translation preinitiation complex 14
GO:0002182 cytoplasmic translational elongation 20
GO:0005986 sucrose biosynthetic process 4
GO:0005992 trehalose biosynthetic process 14
GO:0006065 UDP-glucuronate biosynthetic process 2
GO:0006075 (1->3)-beta-D-glucan biosynthetic process 38
GO:0006085 acetyl-CoA biosynthetic process 2
GO:0006167 AMP biosynthetic process 8
GO:0006169 adenosine salvage 10
GO:0006176 dATP biosynthetic process from ADP 4
GO:0006182 cGMP biosynthetic process 6
GO:0006183 GTP biosynthetic process 4
GO:0006189 'de novo' IMP biosynthetic process 4
GO:0006223 uracil salvage 2
GO:0006226 dUMP biosynthetic process 6
GO:0006228 UTP biosynthetic process 2
GO:0006231 dTMP biosynthetic process 2
GO:0006233 dTDP biosynthetic process 4
GO:0006260 DNA replication 4
GO:0006261 DNA-dependent DNA replication 20
GO:0006264 mitochondrial DNA replication 8
GO:0006268 DNA unwinding involved in DNA replication 2
GO:0006269 DNA replication, synthesis of RNA primer 14
GO:0006270 DNA replication initiation 2
GO:0006273 lagging strand elongation 6
GO:0006275 regulation of DNA replication 8
GO:0006279 premeiotic DNA replication 6
GO:0006342 chromatin silencing 16
GO:0006346 DNA methylation-dependent heterochromatin assembly 6
GO:0006348 chromatin silencing at telomere 6
GO:0006351 transcription, DNA-templated 10
GO:0006352 DNA-templated transcription, initiation 14
GO:0006353 DNA-templated transcription, termination 36
GO:0006355 regulation of transcription, DNA-templated 42
GO:0006357 regulation of transcription by RNA polymerase II 62
GO:0006360 transcription by RNA polymerase I 14
GO:0006367 transcription initiation from RNA polymerase II promoter 6
GO:0006368 transcription elongation from RNA polymerase II promoter 4
GO:0006369 termination of RNA polymerase II transcription 42
GO:0006383 transcription by RNA polymerase III 10
GO:0006384 transcription initiation from RNA polymerase III promoter 2
GO:0006393 termination of mitochondrial transcription 2
GO:0006412 translation 8
GO:0006413 translational initiation 8
GO:0006414 translational elongation 2
GO:0006415 translational termination 12
GO:0006417 regulation of translation 8
GO:0006418 tRNA aminoacylation for protein translation 14
GO:0006419 alanyl-tRNA aminoacylation 26
GO:0006420 arginyl-tRNA aminoacylation 24
GO:0006421 asparaginyl-tRNA aminoacylation 2
GO:0006422 aspartyl-tRNA aminoacylation 22
GO:0006423 cysteinyl-tRNA aminoacylation 2
GO:0006424 glutamyl-tRNA aminoacylation 8
GO:0006425 glutaminyl-tRNA aminoacylation 2
GO:0006426 glycyl-tRNA aminoacylation 24
GO:0006427 histidyl-tRNA aminoacylation 2
GO:0006428 isoleucyl-tRNA aminoacylation 6
GO:0006429 leucyl-tRNA aminoacylation 44
GO:0006430 lysyl-tRNA aminoacylation 16
GO:0006431 methionyl-tRNA aminoacylation 12
GO:0006432 phenylalanyl-tRNA aminoacylation 16
GO:0006433 prolyl-tRNA aminoacylation 28
GO:0006434 seryl-tRNA aminoacylation 24
GO:0006435 threonyl-tRNA aminoacylation 32
GO:0006436 tryptophanyl-tRNA aminoacylation 10
GO:0006437 tyrosyl-tRNA aminoacylation 4
GO:0006438 valyl-tRNA aminoacylation 54
GO:0006486 protein glycosylation 86
GO:0006487 protein N-linked glycosylation 2
GO:0006488 dolichol-linked oligosaccharide biosynthetic process 4
GO:0006493 protein O-linked glycosylation 2
GO:0006499 N-terminal protein myristoylation 4
GO:0006506 GPI anchor biosynthetic process 14
GO:0006529 asparagine biosynthetic process 14
GO:0006535 cysteine biosynthetic process from serine 2
GO:0006537 glutamate biosynthetic process 10
GO:0006542 glutamine biosynthetic process 8
GO:0006557 S-adenosylmethioninamine biosynthetic process 2
GO:0006571 tyrosine biosynthetic process 4
GO:0006592 ornithine biosynthetic process 12
GO:0006596 polyamine biosynthetic process 6
GO:0006633 fatty acid biosynthetic process 46
GO:0006636 unsaturated fatty acid biosynthetic process 8
GO:0006651 diacylglycerol biosynthetic process 26
GO:0006654 phosphatidic acid biosynthetic process 4
GO:0006656 phosphatidylcholine biosynthetic process 2
GO:0006661 phosphatidylinositol biosynthetic process 2
GO:0006679 glucosylceramide biosynthetic process 2
GO:0006729 tetrahydrobiopterin biosynthetic process 4
GO:0006741 NADP biosynthetic process 16
GO:0006744 ubiquinone biosynthetic process 2
GO:0006747 FAD biosynthetic process 2
GO:0006777 Mo-molybdopterin cofactor biosynthetic process 2
GO:0006780 uroporphyrinogen III biosynthetic process 4
GO:0006784 heme A biosynthetic process 22
GO:0006799 polyphosphate biosynthetic process 2
GO:0006809 nitric oxide biosynthetic process 4
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 6
GO:0007004 telomere maintenance via telomerase 2
GO:0008299 isoprenoid biosynthetic process 26
GO:0008654 phospholipid biosynthetic process 4
GO:0009070 serine family amino acid biosynthetic process 4
GO:0009073 aromatic amino acid family biosynthetic process 2
GO:0009082 branched-chain amino acid biosynthetic process 8
GO:0009089 lysine biosynthetic process via diaminopimelate 2
GO:0009094 L-phenylalanine biosynthetic process 2
GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway 20
GO:0009099 valine biosynthetic process 2
GO:0009127 purine nucleoside monophosphate biosynthetic process 2
GO:0009152 purine ribonucleotide biosynthetic process 2
GO:0009190 cyclic nucleotide biosynthetic process 2
GO:0009202 deoxyribonucleoside triphosphate biosynthetic process 2
GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process 2
GO:0009228 thiamine biosynthetic process 4
GO:0009229 thiamine diphosphate biosynthetic process 2
GO:0009231 riboflavin biosynthetic process 2
GO:0009234 menaquinone biosynthetic process 2
GO:0009250 glucan biosynthetic process 4
GO:0009263 deoxyribonucleotide biosynthetic process 4
GO:0009299 mRNA transcription 4
GO:0009303 rRNA transcription 2
GO:0009309 amine biosynthetic process 2
GO:0009423 chorismate biosynthetic process 2
GO:0009684 indoleacetic acid biosynthetic process 2
GO:0009686 gibberellin biosynthetic process 2
GO:0009691 cytokinin biosynthetic process 2
GO:0009693 ethylene biosynthetic process 12
GO:0009695 jasmonic acid biosynthetic process 4
GO:0009697 salicylic acid biosynthetic process 28
GO:0009759 indole glucosinolate biosynthetic process 20
GO:0009805 coumarin biosynthetic process 6
GO:0009807 lignan biosynthetic process 14
GO:0009809 lignin biosynthetic process 24
GO:0009851 auxin biosynthetic process 2
GO:0009969 xyloglucan biosynthetic process 4
GO:0010023 proanthocyanidin biosynthetic process 12
GO:0010024 phytochromobilin biosynthetic process 6
GO:0010115 regulation of abscisic acid biosynthetic process 12
GO:0010116 positive regulation of abscisic acid biosynthetic process 6
GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway 12
GO:0010192 mucilage biosynthetic process 2
GO:0010236 plastoquinone biosynthetic process 2
GO:0010306 rhamnogalacturonan II biosynthetic process 6
GO:0010364 regulation of ethylene biosynthetic process 4
GO:0010365 positive regulation of ethylene biosynthetic process 16
GO:0010366 negative regulation of ethylene biosynthetic process 4
GO:0010371 regulation of gibberellin biosynthetic process 32
GO:0010372 positive regulation of gibberellin biosynthetic process 2
GO:0010417 glucuronoxylan biosynthetic process 2
GO:0010422 regulation of brassinosteroid biosynthetic process 44
GO:0010493 Lewis a epitope biosynthetic process 4
GO:0010513 positive regulation of phosphatidylinositol biosynthetic process 2
GO:0010581 regulation of starch biosynthetic process 4
GO:0010601 positive regulation of auxin biosynthetic process 2
GO:0010728 regulation of hydrogen peroxide biosynthetic process 2
GO:0010729 positive regulation of hydrogen peroxide biosynthetic process 6
GO:0010730 negative regulation of hydrogen peroxide biosynthetic process 2
GO:0010767 regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage 4
GO:0010964 regulation of heterochromatin assembly by small RNA 4
GO:0015966 diadenosine tetraphosphate biosynthetic process 2
GO:0015986 ATP synthesis coupled proton transport 22
GO:0015995 chlorophyll biosynthetic process 4
GO:0016024 CDP-diacylglycerol biosynthetic process 2
GO:0016053 organic acid biosynthetic process 4
GO:0016094 polyprenol biosynthetic process 4
GO:0016099 monoterpenoid biosynthetic process 12
GO:0016102 diterpenoid biosynthetic process 82
GO:0016104 triterpenoid biosynthetic process 6
GO:0016106 sesquiterpenoid biosynthetic process 6
GO:0016114 terpenoid biosynthetic process 6
GO:0016123 xanthophyll biosynthetic process 2
GO:0016255 attachment of GPI anchor to protein 14
GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine 18
GO:0018130 heterocycle biosynthetic process 4
GO:0018131 oxazole or thiazole biosynthetic process 8
GO:0018279 protein N-linked glycosylation via asparagine 2
GO:0018345 protein palmitoylation 2
GO:0019252 starch biosynthetic process 2
GO:0019264 glycine biosynthetic process from serine 14
GO:0019277 UDP-N-acetylgalactosamine biosynthetic process 2
GO:0019279 L-methionine biosynthetic process from L-homoserine via cystathionine 2
GO:0019305 dTDP-rhamnose biosynthetic process 6
GO:0019354 siroheme biosynthetic process 2
GO:0019365 pyridine nucleotide salvage 6
GO:0019408 dolichol biosynthetic process 18
GO:0019427 acetyl-CoA biosynthetic process from acetate 2
GO:0019432 triglyceride biosynthetic process 2
GO:0019438 aromatic compound biosynthetic process 2
GO:0019509 L-methionine salvage from methylthioadenosine 6
GO:0019745 pentacyclic triterpenoid biosynthetic process 6
GO:0019761 glucosinolate biosynthetic process 2
GO:0030187 melatonin biosynthetic process 4
GO:0030244 cellulose biosynthetic process 10
GO:0030418 nicotianamine biosynthetic process 38
GO:0030497 fatty acid elongation 6
GO:0031297 replication fork processing 18
GO:0031328 positive regulation of cellular biosynthetic process 4
GO:0031408 oxylipin biosynthetic process 24
GO:0031508 pericentric heterochromatin assembly 18
GO:0031935 regulation of chromatin silencing 8
GO:0031937 positive regulation of chromatin silencing 14
GO:0032049 cardiolipin biosynthetic process 8
GO:0032055 negative regulation of translation in response to stress 2
GO:0032212 positive regulation of telomere maintenance via telomerase 2
GO:0032264 IMP salvage 18
GO:0032324 molybdopterin cofactor biosynthetic process 4
GO:0032543 mitochondrial translation 8
GO:0032774 RNA biosynthetic process 2
GO:0032784 regulation of DNA-templated transcription, elongation 14
GO:0032786 positive regulation of DNA-templated transcription, elongation 8
GO:0032875 regulation of DNA endoreduplication 10
GO:0032876 negative regulation of DNA endoreduplication 2
GO:0032877 positive regulation of DNA endoreduplication 4
GO:0032953 regulation of (1->3)-beta-D-glucan biosynthetic process 2
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 32
GO:0033014 tetrapyrrole biosynthetic process 2
GO:0033320 UDP-D-xylose biosynthetic process 4
GO:0033387 putrescine biosynthetic process from ornithine 34
GO:0033389 putrescine biosynthetic process from arginine, using agmatinase 18
GO:0033466 trans-zeatin biosynthetic process 2
GO:0033481 galacturonate biosynthetic process 2
GO:0033506 glucosinolate biosynthetic process from homomethionine 4
GO:0033567 DNA replication, Okazaki fragment processing 6
GO:0033866 nucleoside bisphosphate biosynthetic process 2
GO:0034243 regulation of transcription elongation from RNA polymerase II promoter 2
GO:0034355 NAD salvage 2
GO:0034637 cellular carbohydrate biosynthetic process 2
GO:0034645 cellular macromolecule biosynthetic process 14
GO:0034654 nucleobase-containing compound biosynthetic process 14
GO:0035278 miRNA mediated inhibition of translation 56
GO:0036066 protein O-linked fucosylation 14
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process 4
GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process 16
GO:0042276 error-prone translesion synthesis 36
GO:0042351 'de novo' GDP-L-fucose biosynthetic process 8
GO:0042364 water-soluble vitamin biosynthetic process 2
GO:0042371 vitamin K biosynthetic process 4
GO:0042372 phylloquinone biosynthetic process 10
GO:0042759 long-chain fatty acid biosynthetic process 8
GO:0042761 very long-chain fatty acid biosynthetic process 2
GO:0042793 plastid transcription 2
GO:0042794 plastid rRNA transcription 2
GO:0042819 vitamin B6 biosynthetic process 12
GO:0043043 peptide biosynthetic process 2
GO:0043100 pyrimidine nucleobase salvage 10
GO:0043386 mycotoxin biosynthetic process 2
GO:0043433 negative regulation of DNA-binding transcription factor activity 4
GO:0043447 alkane biosynthetic process 6
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 6
GO:0043693 monoterpene biosynthetic process 4
GO:0044205 'de novo' UMP biosynthetic process 2
GO:0044209 AMP salvage 8
GO:0044271 cellular nitrogen compound biosynthetic process 4
GO:0045014 carbon catabolite repression of transcription by glucose 2
GO:0045017 glycerolipid biosynthetic process 2
GO:0045122 aflatoxin biosynthetic process 10
GO:0045337 farnesyl diphosphate biosynthetic process 2
GO:0045492 xylan biosynthetic process 18
GO:0045723 positive regulation of fatty acid biosynthetic process 6
GO:0045727 positive regulation of translation 18
GO:0045892 negative regulation of transcription, DNA-templated 8
GO:0045893 positive regulation of transcription, DNA-templated 4
GO:0045901 positive regulation of translational elongation 18
GO:0045905 positive regulation of translational termination 2
GO:0045943 positive regulation of transcription by RNA polymerase I 2
GO:0045944 positive regulation of transcription by RNA polymerase II 34
GO:0046109 uridine biosynthetic process 2
GO:0046184 aldehyde biosynthetic process 2
GO:0046189 phenol-containing compound biosynthetic process 2
GO:0046202 cyanide biosynthetic process 2
GO:0046394 carboxylic acid biosynthetic process 6
GO:0046512 sphingosine biosynthetic process 16
GO:0046520 sphingoid biosynthetic process 18
GO:0046656 folic acid biosynthetic process 2
GO:0046854 phosphatidylinositol phosphate biosynthetic process 2
GO:0046885 regulation of hormone biosynthetic process 2
GO:0046901 tetrahydrofolylpolyglutamate biosynthetic process 6
GO:0046938 phytochelatin biosynthetic process 52
GO:0046949 fatty-acyl-CoA biosynthetic process 4
GO:0048354 mucilage biosynthetic process involved in seed coat development 4
GO:0048358 mucilage pectin biosynthetic process 4
GO:0050665 hydrogen peroxide biosynthetic process 26
GO:0051091 positive regulation of DNA-binding transcription factor activity 6
GO:0051123 RNA polymerase II preinitiation complex assembly 12
GO:0051502 diterpene phytoalexin biosynthetic process 16
GO:0051762 sesquiterpene biosynthetic process 14
GO:0051973 positive regulation of telomerase activity 14
GO:0052324 plant-type cell wall cellulose biosynthetic process 12
GO:0060195 negative regulation of antisense RNA transcription 2
GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter 16
GO:0060567 negative regulation of DNA-templated transcription, termination 2
GO:0061158 3'-UTR-mediated mRNA destabilization 4
GO:0070158 mitochondrial seryl-tRNA aminoacylation 2
GO:0070179 D-serine biosynthetic process 40
GO:0070455 positive regulation of heme biosynthetic process 4
GO:0070592 cell wall polysaccharide biosynthetic process 4
GO:0070716 mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication 4
GO:0070829 heterochromatin maintenance 4
GO:0070897 transcription preinitiation complex assembly 4
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 8
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain 50
GO:0071266 'de novo' L-methionine biosynthetic process 4
GO:0071267 L-methionine salvage 2
GO:0071932 replication fork reversal 2
GO:0072344 rescue of stalled ribosome 12
GO:0080020 regulation of coenzyme A biosynthetic process 4
GO:0080028 nitrile biosynthetic process 2
GO:0080110 sporopollenin biosynthetic process 4
GO:0080141 regulation of jasmonic acid biosynthetic process 2
GO:0080142 regulation of salicylic acid biosynthetic process 10
GO:0080149 sucrose induced translational repression 2
GO:0090153 regulation of sphingolipid biosynthetic process 2
GO:0090309 positive regulation of DNA methylation-dependent heterochromatin assembly 2
GO:0090359 negative regulation of abscisic acid biosynthetic process 4
GO:0090431 alkyl caffeate ester biosynthetic process 6
GO:0097167 circadian regulation of translation 4
GO:0097659 nucleic acid-templated transcription 10
GO:0106146 sideretin biosynthesis 14
GO:0106147 fraxetin biosynthesis 10
GO:1900030 regulation of pectin biosynthetic process 2
GO:1900088 regulation of inositol biosynthetic process 4
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1900486 positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway 8
GO:1900706 positive regulation of siderophore biosynthetic process 96
GO:1901006 ubiquinone-6 biosynthetic process 2
GO:1901293 nucleoside phosphate biosynthetic process 2
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain 2
GO:1901430 positive regulation of syringal lignin biosynthetic process 14
GO:1901599 (-)-pinoresinol biosynthetic process 70
GO:1901601 strigolactone biosynthetic process 10
GO:1901607 alpha-amino acid biosynthetic process 2
GO:1901663 quinone biosynthetic process 4
GO:1901695 tyramine biosynthetic process 20
GO:1901747 prephenate(2-) biosynthetic process 2
GO:1901937 beta-caryophyllene biosynthetic process 4
GO:1901997 negative regulation of indoleacetic acid biosynthetic process via tryptophan 4
GO:1902609 (R)-2-hydroxy-alpha-linolenic acid biosynthetic process 2
GO:1902979 mitotic DNA replication termination 4
GO:1903506 regulation of nucleic acid-templated transcription 4
GO:1903730 regulation of phosphatidate phosphatase activity 6
GO:1904143 positive regulation of carotenoid biosynthetic process 4
GO:1904964 positive regulation of phytol biosynthetic process 12
GO:2000029 regulation of proanthocyanidin biosynthetic process 2
GO:2000082 regulation of L-ascorbic acid biosynthetic process 2
GO:2000083 negative regulation of L-ascorbic acid biosynthetic process 12
GO:2000104 negative regulation of DNA-dependent DNA replication 6
GO:2000112 regulation of cellular macromolecule biosynthetic process 8
GO:2000113 negative regulation of cellular macromolecule biosynthetic process 18
GO:2000143 negative regulation of DNA-templated transcription, initiation 48
GO:2000541 positive regulation of protein geranylgeranylation 2
GO:2001006 regulation of cellulose biosynthetic process 4
GO:2001007 negative regulation of cellulose biosynthetic process 34
GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process 4
GO:2001141 regulation of RNA biosynthetic process 10
GO:2001280 positive regulation of unsaturated fatty acid biosynthetic process 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001